Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,436,454 – 2,436,573 |
Length | 119 |
Max. P | 0.964969 |
Location | 2,436,454 – 2,436,573 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.49 |
Mean single sequence MFE | -32.90 |
Consensus MFE | -32.34 |
Energy contribution | -32.10 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -1.58 |
Structure conservation index | 0.98 |
SVM decision value | 1.57 |
SVM RNA-class probability | 0.964969 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2436454 119 - 27905053 GUUACUGCCGACUGUGAUUUGUUGGCAUCGUUACUGUUGUCGCUCUCAGCAAACUGGGCAUAAAUCGUGCACACCUACAUUAUGUUGCGAUAAAUCUGUAAUGACCAGAACAGACCAAC- (((.((((((((........)))))).(((((((..(((((((..((((....))))((((.....))))................)))))))....)))))))..)))))........- ( -32.10) >DroSec_CAF1 2589 120 - 1 GUUACUGCCGACUGUGAUUUGUUGGCAUCGUUACUGUUGUCGCUCUCAGCAAACUGGGCAUAAAUCGUGCACACCUACAUUAUGCUGCGAUAAAUCUGUAAUGACCAGAACAGACCAACC (((.((((((((........)))))).(((((((..(((((((...(((....)))(((((((...(((......))).))))))))))))))....)))))))..)))))......... ( -34.40) >DroSim_CAF1 2671 119 - 1 GUUACUGCCGACUGUGAUUUGUUGGCAUCGUUACUGUUGUCGCUCUCAGCAAACUGGGCAUAAAUCGUGCACACCUACAUUAUGCUGCGAUAAAUCUGUAAUGACCAGAACAGACCAAC- (((.((((((((........)))))).(((((((..(((((((...(((....)))(((((((...(((......))).))))))))))))))....)))))))..)))))........- ( -34.40) >DroEre_CAF1 2581 119 - 1 GUUACUGCCGACUGUGAUUUGUUGGCAUCGUUACUGUUGUCGCUCUCAGCAAACUGGGCAUAAAUCGUGCACACCUACAUUAUGUUGCGAUAAAUCUGUAAUGACCAGAACAGACCAGC- (((.((((((((........)))))).(((((((..(((((((..((((....))))((((.....))))................)))))))....)))))))..)))))........- ( -32.10) >DroYak_CAF1 2622 118 - 1 G-UACUGCCGACUGUGAUUUGUUGGCAUCGUUACUGUUGUCGCUCUCAGCAAACUGGGCAUAAAUCGUGCACACCUACAUUAUGUUGCGAUAAAUCUGUAAUGACCAGAACAGACCAAC- (-(.((((((((........)))))).(((((((..(((((((..((((....))))((((.....))))................)))))))....)))))))..)).))........- ( -31.50) >consensus GUUACUGCCGACUGUGAUUUGUUGGCAUCGUUACUGUUGUCGCUCUCAGCAAACUGGGCAUAAAUCGUGCACACCUACAUUAUGUUGCGAUAAAUCUGUAAUGACCAGAACAGACCAAC_ .....(((((((........)))))))(((((((..(((((((...(((....)))(((((((...(((......))).))))))))))))))....)))))))................ (-32.34 = -32.10 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:47 2006