Locus 6659

Sequence ID 3R_DroMel_CAF1
Location 17,508,341 – 17,508,454
Length 113
Max. P 0.607664
window10835

overview

Window 5

Location 17,508,341 – 17,508,454
Length 113
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 87.14
Mean single sequence MFE -28.55
Consensus MFE -21.48
Energy contribution -22.32
Covariance contribution 0.84
Combinations/Pair 1.04
Mean z-score -1.63
Structure conservation index 0.75
SVM decision value 0.15
SVM RNA-class probability 0.607664
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17508341 113 + 27905053
AAAACAUGUCAGGGCGACACUUUGACCAAGUUGCAGGUUUCUUUUUUUUUUUUUAUAGAC-ACAACUUGCAACUCGUCGUCGGCAGUGGCAAUAACAACAAAUACGGCAACGGC
......(((((.(.((((.....(((..((((((((((((((..............))).-..))))))))))).))))))).)..))))).............((....)).. ( -30.24)
>DroSec_CAF1 17181 109 + 1
AAAACAUGUCAGGGCGACACUUUGACCAAGUUGCAGGUUUCUUUU----UUUUUAUAGAC-ACAACUUGCAACUCGUCGUCGGCAGUGGCAAUAACAACAAAUACGGCAAAGGC
......(((((.(.((((.....(((..((((((((((((((...----.......))).-..))))))))))).))))))).)..)))))....................... ( -27.10)
>DroSim_CAF1 17786 108 + 1
AAAACAUGUCAGGGCGACACUUUGACCAAGUUGCAGGUUUCUUUU-----UUUUAUAGAC-ACAACUUGCAACUCGUCGUCGGCAGUGGCAAUAACAACAAAUACGGCAACGGC
......(((((.(.((((.....(((..((((((((((((((...-----......))).-..))))))))))).))))))).)..))))).............((....)).. ( -30.70)
>DroEre_CAF1 17660 107 + 1
AAAACAUGUCAGGGCGACACUUUGACCAAGUUGCAGGUUUCUUU------UUUUAUAGAC-ACAACUUGCAACUCGUCGUCGGCAGUGGCAAUAACAACGAAUACGGCAACGGC
......(((((.(.((((.....(((..((((((((((((((..------......))).-..))))))))))).))))))).)..))))).............((....)).. ( -31.50)
>DroAna_CAF1 17719 96 + 1
AAAACAUGUCAGGGCGACACUUUGACCAAGUUGCAGGUUUCUUUUU---UUUUUAUAGGCAACAACUUGCAACUCUUCGGAGGCAACAGCAG---------------AAGCAGC
.......(((((((.....)))))))...(((((............---.........((((....))))..(((....)))))))).((..---------------..))... ( -23.20)
>consensus
AAAACAUGUCAGGGCGACACUUUGACCAAGUUGCAGGUUUCUUUU____UUUUUAUAGAC_ACAACUUGCAACUCGUCGUCGGCAGUGGCAAUAACAACAAAUACGGCAACGGC
......(((((.(.((((.....(((..((((((((((((((..............)))....))))))))))).))))))).)..)))))....................... (-21.48 = -22.32 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:59 2006