| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,485,685 – 17,485,783 |
| Length | 98 |
| Max. P | 0.712228 |
| Location | 17,485,685 – 17,485,783 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 77.42 |
| Mean single sequence MFE | -22.64 |
| Consensus MFE | -15.25 |
| Energy contribution | -16.25 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.712228 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17485685 98 + 27905053 G-CCCGCGACACUUU---------ACUCACAUCA-UACGUCUUAUUCUUGAUGCAGGUGAUAUGUCAGCUGGACCGGCAUGCAAUUUUUUGCAUAUGUACUUUUUUAGC .-((.((((((..((---------(((..(((((-.............)))))..)))))..)))).)).))......((((((....))))))............... ( -24.32) >DroSec_CAF1 37912 98 + 1 G-CCCGCGCCCCUUC---------GCUCACAUCA-GACGUCUUCUUCUUGAUGCAGCUGCUGUGUCAGCUGGACCGGCAUGCAAUUUUUUGCAUAUGUACUUUUUUAGC .-...(((((..(((---------(((((((.((-(.((((........))))...))).))))..))).)))..)))((((((....)))))).............)) ( -26.50) >DroSim_CAF1 38945 98 + 1 G-CCCGCGCCCCUUC---------GCUCACAUCA-GGCGUCUUCUUCUUGAUGCAGCUGCUGUGUCAGCUGGACCGGCAUGCAAUUUUUUGCAUAUGUACUUUUUUAGC .-...(((((..(((---------(((((((.((-((((((........)))))..))).))))..))).)))..)))((((((....)))))).............)) ( -28.70) >DroEre_CAF1 38245 97 + 1 ACCCCGCGCCCCUUC---------A--CCUAACACGACGUCUUCUUCUUAAUGCAGCUGCUGUGUCAGCUGGCCCGGCAUGCAAUUUUUUGCAUAUGUACUU-UUUAGC .....(((((...((---------(--.((.(((((.((.((.(........).)).)).))))).)).)))...)))((((((....))))))........-....)) ( -20.00) >DroYak_CAF1 39265 98 + 1 UCCCC-CGCCCUAUC---------ACUCCUCCCACAACGUUUUUUUCUUGAUGCAGCUGCUGUGUCAGCUGGACCGGCAUGCAAUUUUUUGCAUAUGAACUU-UUUAGC .....-.(((...((---------.............((((........))))((((((......))))))))..)))((((((....))))))........-...... ( -19.40) >DroAna_CAF1 56773 104 + 1 A-CCCCCGCCACUUCUGUACUGGAGCUCCCCCCA-ACCCCUCUCUAUUUUUUGCAGCUGCUGCGUCAGCUGGACCGGCAUGAACUUUUUUUUU---UUUCCUCCUUUGC .-.....(((.((((......)))).........-..................((((((......))))))....)))...............---............. ( -16.90) >consensus G_CCCGCGCCCCUUC_________ACUCACAUCA_GACGUCUUCUUCUUGAUGCAGCUGCUGUGUCAGCUGGACCGGCAUGCAAUUUUUUGCAUAUGUACUUUUUUAGC .......(((...........................((((........))))((((((......))))))....)))((((((....))))))............... (-15.25 = -16.25 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:56 2006