Locus 6656

Sequence ID 3R_DroMel_CAF1
Location 17,484,685 – 17,484,779
Length 94
Max. P 0.848253
window10831

overview

Window 1

Location 17,484,685 – 17,484,779
Length 94
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 76.92
Mean single sequence MFE -24.68
Consensus MFE -12.02
Energy contribution -13.97
Covariance contribution 1.95
Combinations/Pair 1.28
Mean z-score -2.18
Structure conservation index 0.49
SVM decision value 0.78
SVM RNA-class probability 0.848253
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17484685 94 + 27905053
UCCCUUGUGGACAGUCUGGCAACGCUUCGACGAGCUUUGCUGCUCCAAUUCGAAAUCUAAUCACUGAUUUCGAUUCCCUAGCGGCAAACAUUAU----
...(((((.((.(((..(....)))))).))))).(((((((((.....((((((((........))))))))......)))))))))......---- ( -30.30)
>DroSec_CAF1 36819 94 + 1
UCCCUUGUGGACAGUCUGGCAACGCGGCAACGAGCUUUGCUGCUCCAAUUCGAAAUCUAAUCAACGAUUUCGAUUCCCCAGCGGCUAACAUUAU----
.((.(((((((((((..(((....((....)).)))..)))).))))..((((((((........)))))))).....))).))..........---- ( -27.10)
>DroSim_CAF1 37865 94 + 1
UCCCUUGUGGACAGUCUGGCAACGCUUCAACGAGCUUUGCUGCUCCAAUUCGAAAUCUAAUCAACGAUUUCGAUUCCCCAGCGGCUAACAUUGU----
..((....))..((((.(((((.((((....)))).)))))(((.....((((((((........))))))))......)))))))........---- ( -25.40)
>DroEre_CAF1 37211 94 + 1
UCCCUUAUGGGCAAUCUGGCAACGCUUCAACGAGCUUUGCUGCUCCAAUUUGAAAUCUAAUCAAUGAUUUCGAUUCCCCAGGGGCUAACAUUAA----
.((((..((((.((((.(((((.((((....)))).)))))..........((((((........)))))))))).))))))))..........---- ( -29.20)
>DroYak_CAF1 38134 85 + 1
UCCGUUAUGGGCGAUCUGGCAACGCUUGCACGAGCUUUGCUGCUCCAAUUUGAAAUCUAAUCAA---------UUCCCCAGGGGCUAACAUGAA----
....(((((........(((((.((((....)))).)))))(((((...((((.......))))---------.......)))))...))))).---- ( -20.20)
>DroPer_CAF1 40346 90 + 1
UCCCUCAGGACCAGUCUGGCAACGCUUUAA--------GCACUUGCAAAUUAAAAACUAAUCAGAGAUUUUAACUCCCCAAGGGCCCCCGCUCUAUGG
...(((.(((....))).((((.((.....--------))..)))).................)))...........((((((((....))))).))) ( -15.90)
>consensus
UCCCUUAUGGACAGUCUGGCAACGCUUCAACGAGCUUUGCUGCUCCAAUUCGAAAUCUAAUCAACGAUUUCGAUUCCCCAGCGGCUAACAUUAU____
.................(....)(((((...((((......))))....((((((((........)))))))).......)))))............. (-12.02 = -13.97 +   1.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:55 2006