| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,482,489 – 17,482,594 |
| Length | 105 |
| Max. P | 0.759912 |
| Location | 17,482,489 – 17,482,594 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 79.94 |
| Mean single sequence MFE | -26.31 |
| Consensus MFE | -13.30 |
| Energy contribution | -13.97 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.759912 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17482489 105 - 27905053 GCUUUGUUGUUGAUUU-UUUUGUCAGUGCUGUUAGCUGGUUUCUGUUGGGCUUUCGGUU---------GCCUGGCUAUUUUUAAAAAUUUUGUGCGAAAGCAACAAAA--AAGUCA-A .........(((((((-((((((((((.......))))......((..(((........---------)))..)).................(((....)))))))))--))))))-) ( -29.70) >DroPse_CAF1 40464 102 - 1 U------------UUU-UUUUGUUUGC-CCGUUGGCUGGUUUCUGUUGGGCUUUUGGCU-UUUUUUUCUCUUGGCUAUUUUUAAAUAU-UUGCGCGAAAGCAACAAAAAAAAGUUAUA (------------(((-(((((((.((-(((..((.......))..)))))...(((((-............)))))...........-....((....)))))))))))))...... ( -22.10) >DroSec_CAF1 34532 105 - 1 GCUUUGCUGUUGAUUU-UUUUGUCAGUGCUGUUAGCAGGUUUCUGUUGGGCUUUCGGUU---------GCCUGGCUAUUUUUAAAAAUUUUGUGCGAAAGCAACAAAA--AAGUCU-A ...........(((((-((((((.....(((....)))......((..(((........---------)))..)).................(((....)))))))))--))))).-. ( -27.50) >DroEre_CAF1 35034 105 - 1 GCUUUGUUGUUGAUUUUUUUUGUCAGUGCUGUUAGCUGGUUUCUGUUGGGCUUUUGGUU---------GCCUGGCUAUUUUUAAAAAUUUUGUGCGAAAGCAA-AAAA--AAGUCA-A .........(((((((((((((((((.((((..((((.(.......).))))..)))).---------..))))).................(((....))))-))))--))))))-) ( -27.40) >DroYak_CAF1 35890 105 - 1 GUUUUGUUGUUGAUUU-UUUUGUCAGUGCUGUUAGCUGGUUUCUGUUGGGCUUUUGGUU---------GCCUGGCUAUUUUUAAAAAUUUUGUGCGAAAGCAACAAAA--AAGUCA-A .........(((((((-((((((((((.......))))......((..(((........---------)))..)).................(((....)))))))))--))))))-) ( -29.70) >DroPer_CAF1 37845 103 - 1 U------------UUU-UUUUGUUUGC-CCGUUGGCUGGUUUCUGUUGGGCUUUUGGCUCUUUUUUUCUCUUGGCUAUUUUUAAAUAU-UUGCGCGAAAGCAACAAAAAAAAGUUAUA (------------(((-(((((((...-....((((..(........((((.....))))..........)..))))...........-....((....)))))))))))))...... ( -21.47) >consensus GCUUUGUUGUUGAUUU_UUUUGUCAGUGCUGUUAGCUGGUUUCUGUUGGGCUUUUGGUU_________GCCUGGCUAUUUUUAAAAAUUUUGUGCGAAAGCAACAAAA__AAGUCA_A ...........(((((..(((((....((((..((((.(.......).))))..))))...................................((....)).)))))...)))))... (-13.30 = -13.97 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:55 2006