Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 17,480,443 – 17,480,559 |
Length | 116 |
Max. P | 0.988937 |
Location | 17,480,443 – 17,480,559 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 98.10 |
Mean single sequence MFE | -30.29 |
Consensus MFE | -29.68 |
Energy contribution | -29.76 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.07 |
Mean z-score | -1.73 |
Structure conservation index | 0.98 |
SVM decision value | 2.14 |
SVM RNA-class probability | 0.988937 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17480443 116 + 27905053 GAUCGCCCCGUGUCCCAUAAAUUGCAUUCGUUAUCGAUUUUCACAAAGUUUUUCUUUCACUCGAUCGUGGGUUCCUUGUUUCUUUCGUGAUUUCUUGGGAUCCUGGGGUGAAAUGC ..((((((((.((((((.((((..(..(((....)))..................(((((......)))))...............)..))))..))))))..))))))))..... ( -32.00) >DroSec_CAF1 32502 116 + 1 GAUCGCCCCGUGUCCCAUAAAUUGCAUUCGUUAUCGAUUUUCACAAAGUUUUUCUUUCACUCGAUCGUGGGUUCCUUGUUUCUUUCGUGAUUUCUUGGGAUCCUGGGGUGAAAUGC ..((((((((.((((((.((((..(..(((....)))..................(((((......)))))...............)..))))..))))))..))))))))..... ( -32.00) >DroSim_CAF1 33478 116 + 1 GAUCGCCCCGUGUCCCAUAAAUUGCAUUCGUUAUCGAUUUUCACAAAGUUUUUCUUUCACUCGAUCGUGGGUUCCUUGUUUCUUUCGUGAUUUCUUGGGAUCCUGGGGUGAAAUGC ..((((((((.((((((.((((..(..(((....)))..................(((((......)))))...............)..))))..))))))..))))))))..... ( -32.00) >DroEre_CAF1 32959 116 + 1 GAUCGCCCCGUGUCCCAUAAAUUGCAUUCGUUAUCGAUUUUCACAAAGUUUUCCUUUCACUCGAUCGUGGGUUCCUUGUUUCUUUCGUGAUUUCUUAGGAUCCUGGGGUGAAAUGC ..((((((((.((((............(((....)))...((((((((.......(((((......)))))..........)))).)))).......))))..))))))))..... ( -26.63) >DroYak_CAF1 33714 116 + 1 GAUCGCCCCGUGUCCCAUAAAUUGCAUUCGUUAUCGAUUUUCACAAAGUUUUUCUUUUACUCGGUCGUGGGUUCCUUGUUUCUUUCGUGAUUUCUUAGGAUCCCGGGGUGAAAUGC ..((((((((.((((............(((....)))...((((((((..........(((((....))))).........)))).)))).......))))..))))))))..... ( -28.81) >consensus GAUCGCCCCGUGUCCCAUAAAUUGCAUUCGUUAUCGAUUUUCACAAAGUUUUUCUUUCACUCGAUCGUGGGUUCCUUGUUUCUUUCGUGAUUUCUUGGGAUCCUGGGGUGAAAUGC ..((((((((.((((((.((((..(..(((....)))..................(((((......)))))...............)..))))..))))))..))))))))..... (-29.68 = -29.76 + 0.08)
Location | 17,480,443 – 17,480,559 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 98.10 |
Mean single sequence MFE | -26.92 |
Consensus MFE | -26.02 |
Energy contribution | -25.98 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.62 |
Structure conservation index | 0.97 |
SVM decision value | 1.70 |
SVM RNA-class probability | 0.972869 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17480443 116 - 27905053 GCAUUUCACCCCAGGAUCCCAAGAAAUCACGAAAGAAACAAGGAACCCACGAUCGAGUGAAAGAAAAACUUUGUGAAAAUCGAUAACGAAUGCAAUUUAUGGGACACGGGGCGAUC .....((.((((.(..(((((.(((.(((((((........(....)(((......)))..........)))))))...(((....)))......))).)))))..))))).)).. ( -27.70) >DroSec_CAF1 32502 116 - 1 GCAUUUCACCCCAGGAUCCCAAGAAAUCACGAAAGAAACAAGGAACCCACGAUCGAGUGAAAGAAAAACUUUGUGAAAAUCGAUAACGAAUGCAAUUUAUGGGACACGGGGCGAUC .....((.((((.(..(((((.(((.(((((((........(....)(((......)))..........)))))))...(((....)))......))).)))))..))))).)).. ( -27.70) >DroSim_CAF1 33478 116 - 1 GCAUUUCACCCCAGGAUCCCAAGAAAUCACGAAAGAAACAAGGAACCCACGAUCGAGUGAAAGAAAAACUUUGUGAAAAUCGAUAACGAAUGCAAUUUAUGGGACACGGGGCGAUC .....((.((((.(..(((((.(((.(((((((........(....)(((......)))..........)))))))...(((....)))......))).)))))..))))).)).. ( -27.70) >DroEre_CAF1 32959 116 - 1 GCAUUUCACCCCAGGAUCCUAAGAAAUCACGAAAGAAACAAGGAACCCACGAUCGAGUGAAAGGAAAACUUUGUGAAAAUCGAUAACGAAUGCAAUUUAUGGGACACGGGGCGAUC .....((.((((.(..(((((.(((.((((.................(((......)))((((.....))))))))...(((....)))......))).)))))..))))).)).. ( -26.10) >DroYak_CAF1 33714 116 - 1 GCAUUUCACCCCGGGAUCCUAAGAAAUCACGAAAGAAACAAGGAACCCACGACCGAGUAAAAGAAAAACUUUGUGAAAAUCGAUAACGAAUGCAAUUUAUGGGACACGGGGCGAUC .....((.(((((...(((((.(((.(((((((........((...))((......))...........)))))))...(((....)))......))).)))))..))))).)).. ( -25.40) >consensus GCAUUUCACCCCAGGAUCCCAAGAAAUCACGAAAGAAACAAGGAACCCACGAUCGAGUGAAAGAAAAACUUUGUGAAAAUCGAUAACGAAUGCAAUUUAUGGGACACGGGGCGAUC .....((.((((.(..(((((.(((.(((((((........(....)(((......)))..........)))))))...(((....)))......))).)))))..))))).)).. (-26.02 = -25.98 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:53 2006