Locus 6651

Sequence ID 3R_DroMel_CAF1
Location 17,471,836 – 17,471,927
Length 91
Max. P 0.529410
window10825

overview

Window 5

Location 17,471,836 – 17,471,927
Length 91
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 98.46
Mean single sequence MFE -30.82
Consensus MFE -28.30
Energy contribution -28.90
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.26
Structure conservation index 0.92
SVM decision value -0.01
SVM RNA-class probability 0.529410
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17471836 91 + 27905053
AGGCAGGCGAAACCUGAUUUGCUGCUGACGACCAAGAACGGGGGCUAAGGCCAGGAGGCCCAGCCAAAGUCGCAAGAGUUUAAAGGGCCCG
.(((((.((((......)))))))))............((((((((..((((....)))).))))(((.((....)).)))......)))) ( -32.70)
>DroSec_CAF1 23962 91 + 1
AGGCAGGCGAAACCUGAUUUGCUGCUGACGACCAAGAACGGGGGCUAAGGCCAGGAGGCGCAGCCAAAGUCGCAAGAGUUUAAAGGGCCCG
.(((((.((((......)))))))))............((((((((...(((....)))..))))(((.((....)).)))......)))) ( -29.50)
>DroSim_CAF1 24958 91 + 1
AGGCAGGCGAAACCUGAUUUGCUGCUGACGACCAAGAACGGGGGCUAAGGCCAGCAGGCGCAGCCAAAGUCGCAAGAGUUUAAAGGGCCCG
.(((((.((((......))))))))).....((......))(((((..(((..((....)).)))(((.((....)).)))....))))). ( -29.80)
>DroEre_CAF1 24402 91 + 1
AGGCAGGCGAAACCUGAUUUGCUGCUGACGACCAAGAACGGGGGCUAAGGCCAGGAGGCCCAGCCAAAGUCGCAAGAGUUUAAAGGGCCCG
.(((((.((((......)))))))))............((((((((..((((....)))).))))(((.((....)).)))......)))) ( -32.70)
>DroYak_CAF1 25382 91 + 1
AGGCAGGCGAAACCUGAUUUGCUGCUGACGACCAAGAACGGGGGCUAAGGCCAGGAGGCCCAGCCAAAGUCGCAAAAGUUUAAAGGGCCCG
.(((.((((((......))))))((.(((..((......)).((((..((((....)))).))))...))))).............))).. ( -29.40)
>consensus
AGGCAGGCGAAACCUGAUUUGCUGCUGACGACCAAGAACGGGGGCUAAGGCCAGGAGGCCCAGCCAAAGUCGCAAGAGUUUAAAGGGCCCG
.(((((.((((......)))))))))............((((((((..((((....)))).))))(((.((....)).)))......)))) (-28.30 = -28.90 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:49 2006