Locus 6650

Sequence ID 3R_DroMel_CAF1
Location 17,470,889 – 17,470,987
Length 98
Max. P 0.507064
window10824

overview

Window 4

Location 17,470,889 – 17,470,987
Length 98
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 90.51
Mean single sequence MFE -28.52
Consensus MFE -23.00
Energy contribution -22.80
Covariance contribution -0.20
Combinations/Pair 1.09
Mean z-score -1.34
Structure conservation index 0.81
SVM decision value -0.05
SVM RNA-class probability 0.507064
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17470889 98 - 27905053
CGAUCUGCACUUAACCCAUGGUGAACCGAGUCCGCAAAGGGUUCACUCGUCCCAAGGCACCCGAGUCCACUGAACCGUGGACAAGUCGACAGCCAACA
((((.(((.(((.....((((((((((............))))))).)))...)))))).....((((((......))))))..)))).......... ( -26.40)
>DroSec_CAF1 22927 98 - 1
CGAUCUGCACUUAACCCAUGGUGAACCGAGCCAGCAAAGGGUUCGCUCGUCCCAAGGAACCCGAGUCCACUGAACCGUGGACAAGUCGACAGCCAACA
....((((((((...((.(((.((..(((((.(((.....))).)))))))))).)).......((((((......)))))))))).).)))...... ( -29.50)
>DroSim_CAF1 23932 98 - 1
CGAUCUGCACUUAACCCAUGGUGAACCGAGCCAGCAAAGGGUUCGCCCGUCCCAAGGAAUCCGAGUCCACUGAACCGUGGACAAGUCGACAGCCAACA
....((((((((...((.(((.((..((((((.......))))))....))))).)).......((((((......)))))))))).).)))...... ( -28.80)
>DroEre_CAF1 23524 93 - 1
CGAUCUGCACUUAACCCAUGGUGAACC-----CUUUGCGGGUUCAAUCGUCCCAAGGAACCGGAGUCCACUCAACCGUGGACAAGUCGACAGCCAACA
....((((((((...((.(((((((((-----(.....)))))))......))).)).......((((((......)))))))))).).)))...... ( -27.90)
>DroYak_CAF1 23601 98 - 1
UGAUCUGCACUUAACCGAUGGUGAACCGAGCCCGCAAAGGGUUCACUCGUCCUAAGGAACCCGAGUCCACUCAACCGUGGACAAGUCGACAGCCAACA
....((((((((..((...(((((...((((((.....))))))..))).))...)).......((((((......)))))))))).).)))...... ( -30.00)
>consensus
CGAUCUGCACUUAACCCAUGGUGAACCGAGCCCGCAAAGGGUUCACUCGUCCCAAGGAACCCGAGUCCACUGAACCGUGGACAAGUCGACAGCCAACA
....((((((((.......((((((((............)))))))).................((((((......)))))))))).).)))...... (-23.00 = -22.80 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:49 2006