Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,435,093 – 2,435,213 |
Length | 120 |
Max. P | 0.944924 |
Location | 2,435,093 – 2,435,213 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 99.33 |
Mean single sequence MFE | -31.50 |
Consensus MFE | -31.22 |
Energy contribution | -31.06 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.03 |
Mean z-score | -1.60 |
Structure conservation index | 0.99 |
SVM decision value | 1.35 |
SVM RNA-class probability | 0.944924 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2435093 120 + 27905053 AGUCCUGCUGGCUAACCGGAAAUGCAUCAGUGUCAGUUUCGCUGGCUGCGCAAUUUCGUUAAGAAGUGCGCAAAGUUGUUAAAUUUUACGAUUUAAUUGCGAAACUAUUAAAAAUUACGU .((....((((....))))....)).........((((((((....((((((.((((.....))))))))))(((((((........)))))))....)))))))).............. ( -31.60) >DroSec_CAF1 1040 120 + 1 AGUCCUGCUGGCUAACCGGAAAUGCAUCAGUGUCAGUUUCGCUGGCUGCGCAAUUUUGUUAAGAAGUGCGCAAAGUUGUUAAAUUUUACGAUUUAAUUGCGAAACUAUUAAAAAUUACGU .((....((((....))))....)).........((((((((....((((((.((((....)))).))))))(((((((........)))))))....)))))))).............. ( -30.40) >DroSim_CAF1 1083 120 + 1 AGUCCUGCUGGCUAACCGGAAAUGCAUCAGUGUCAGUUUCGCUGGCUGCGCAAUUUCGUUAAGAAGUGCGCAAAGUUGUUAAAUUUUACGAUUUAAUUGCGAAACUAUUAAAAAUUACGU .((....((((....))))....)).........((((((((....((((((.((((.....))))))))))(((((((........)))))))....)))))))).............. ( -31.60) >DroEre_CAF1 1104 120 + 1 GGUCCUGCUGGCUAACCGGAAAUGCAUCAGUGUCAGUUUCGCUGGCUGCGCAAUUUCGUUAAGAAGUGCGCAAAGUUGUUAAAUUUUACGAUUUAAUUGCGAAACUAUUAAAAAUUACGU ((..(((((((....))))........)))..))((((((((....((((((.((((.....))))))))))(((((((........)))))))....)))))))).............. ( -32.30) >DroYak_CAF1 1106 120 + 1 AGUCCUGCUGGCUAACCGGAAAUGCAUCAGUGUCAGUUUCGCUGGCUGCGCAAUUUCGUUAAGAAGUGCGCAAAGUUGUUAAAUUUUACGAUUUAAUUGCGAAACUAUUAAAAAUUACGU .((....((((....))))....)).........((((((((....((((((.((((.....))))))))))(((((((........)))))))....)))))))).............. ( -31.60) >consensus AGUCCUGCUGGCUAACCGGAAAUGCAUCAGUGUCAGUUUCGCUGGCUGCGCAAUUUCGUUAAGAAGUGCGCAAAGUUGUUAAAUUUUACGAUUUAAUUGCGAAACUAUUAAAAAUUACGU .((....((((....))))....)).........((((((((....((((((.((((.....))))))))))(((((((........)))))))....)))))))).............. (-31.22 = -31.06 + -0.16)
Location | 2,435,093 – 2,435,213 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 99.33 |
Mean single sequence MFE | -26.28 |
Consensus MFE | -25.64 |
Energy contribution | -25.84 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.39 |
Structure conservation index | 0.98 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.789348 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2435093 120 - 27905053 ACGUAAUUUUUAAUAGUUUCGCAAUUAAAUCGUAAAAUUUAACAACUUUGCGCACUUCUUAACGAAAUUGCGCAGCCAGCGAAACUGACACUGAUGCAUUUCCGGUUAGCCAGCAGGACU ..(((.((.....(((((((((..((((((......)))))).....(((((((.(((.....)))..)))))))...))))))))).....)))))...(((.(((....))).))).. ( -26.60) >DroSec_CAF1 1040 120 - 1 ACGUAAUUUUUAAUAGUUUCGCAAUUAAAUCGUAAAAUUUAACAACUUUGCGCACUUCUUAACAAAAUUGCGCAGCCAGCGAAACUGACACUGAUGCAUUUCCGGUUAGCCAGCAGGACU ..(((.((.....(((((((((..((((((......)))))).....(((((((.((........)).)))))))...))))))))).....)))))...(((.(((....))).))).. ( -25.00) >DroSim_CAF1 1083 120 - 1 ACGUAAUUUUUAAUAGUUUCGCAAUUAAAUCGUAAAAUUUAACAACUUUGCGCACUUCUUAACGAAAUUGCGCAGCCAGCGAAACUGACACUGAUGCAUUUCCGGUUAGCCAGCAGGACU ..(((.((.....(((((((((..((((((......)))))).....(((((((.(((.....)))..)))))))...))))))))).....)))))...(((.(((....))).))).. ( -26.60) >DroEre_CAF1 1104 120 - 1 ACGUAAUUUUUAAUAGUUUCGCAAUUAAAUCGUAAAAUUUAACAACUUUGCGCACUUCUUAACGAAAUUGCGCAGCCAGCGAAACUGACACUGAUGCAUUUCCGGUUAGCCAGCAGGACC ..(((.((.....(((((((((..((((((......)))))).....(((((((.(((.....)))..)))))))...))))))))).....)))))...(((.(((....))).))).. ( -26.60) >DroYak_CAF1 1106 120 - 1 ACGUAAUUUUUAAUAGUUUCGCAAUUAAAUCGUAAAAUUUAACAACUUUGCGCACUUCUUAACGAAAUUGCGCAGCCAGCGAAACUGACACUGAUGCAUUUCCGGUUAGCCAGCAGGACU ..(((.((.....(((((((((..((((((......)))))).....(((((((.(((.....)))..)))))))...))))))))).....)))))...(((.(((....))).))).. ( -26.60) >consensus ACGUAAUUUUUAAUAGUUUCGCAAUUAAAUCGUAAAAUUUAACAACUUUGCGCACUUCUUAACGAAAUUGCGCAGCCAGCGAAACUGACACUGAUGCAUUUCCGGUUAGCCAGCAGGACU ..(((.((.....(((((((((..((((((......)))))).....(((((((.(((.....)))..)))))))...))))))))).....)))))...(((.(((....))).))).. (-25.64 = -25.84 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:46 2006