| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,470,255 – 17,470,345 |
| Length | 90 |
| Max. P | 0.773936 |
| Location | 17,470,255 – 17,470,345 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 83.00 |
| Mean single sequence MFE | -20.68 |
| Consensus MFE | -14.99 |
| Energy contribution | -15.02 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.773936 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17470255 90 - 27905053 UUCCAUGCAUGUAAUUGCACAUUGCAUCCA--UCAA-G---------GCAUCCCUCCCCAUUAUUUUUUUUUUAGGUAGGCGGCCAA-CUGUCGCCUU-AUCCC ....((((.((....(((.....)))....--.)).-.---------)))).......................((.(((((((...-..))))))).-..)). ( -18.40) >DroSec_CAF1 22299 87 - 1 UUCCAUGCAUGUAAUUGCACAUUGCAUUCA--UCA--G---------GCAUCCCUCCCCAUUAUUUU--UUUUAGGUAGGCGGCCAA-CUGUCGCCUU-AUCCC ....((((.((....(((.....)))....--.))--.---------))))................--.....((.(((((((...-..))))))).-..)). ( -19.70) >DroSim_CAF1 23303 87 - 1 UUCCAUGCAUGUAAUUGCACAUUGCAUCCA--UCA--G---------GCAUCCCUCCCCAUUAUUUU--UUUUAGGUAGGCGGCCAA-CUGUCGCCUU-AUCCC ....((((.((....(((.....)))....--.))--.---------))))................--.....((.(((((((...-..))))))).-..)). ( -19.70) >DroEre_CAF1 22907 81 - 1 UUCUAGGCAUGUAAUUGCACAUUGCAU------CA--G---------GCAUCCCUCCCCAUUACU----UUGUAGGUAGGCGGCCAA-CUGUCGCCUU-AUCCC ....(((.((((...(((.....))).------..--.---------)))).)))..........----.....((.(((((((...-..))))))).-..)). ( -21.90) >DroYak_CAF1 22961 80 - 1 UUCUAUGCAUGUAAUUGCACAUUGCAU------CA--G---------GCAUCCCUCCCCAU-AUU----UUGUAGGUAGGCGGCCAA-CUGUCGCCUU-AUCCC .(((((((((((......))).)))))------.)--)---------).............-...----.....((.(((((((...-..))))))).-..)). ( -19.20) >DroAna_CAF1 43305 101 - 1 UCCCAGGCAUGUAAUUGCAUAUUGCAUCAGUACCAUGGGCAUAGUGCCCAUCCCACCCUAUU-UUAU--UUUUAGGUAGGCGUCCUAUAUGUCGCCUUUUUCCC .....((((((((..(((.....)))........((((((.....))))))...((((((((-(...--....))))))).))..))))))))........... ( -25.20) >consensus UUCCAUGCAUGUAAUUGCACAUUGCAUCCA__UCA__G_________GCAUCCCUCCCCAUUAUUUU__UUUUAGGUAGGCGGCCAA_CUGUCGCCUU_AUCCC ......((((((......))).))).................................................((.(((((((......)))))))....)). (-14.99 = -15.02 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:48 2006