Locus 6645

Sequence ID 3R_DroMel_CAF1
Location 17,459,364 – 17,459,465
Length 101
Max. P 0.955760
window10815

overview

Window 5

Location 17,459,364 – 17,459,465
Length 101
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 95.64
Mean single sequence MFE -33.74
Consensus MFE -32.14
Energy contribution -31.94
Covariance contribution -0.20
Combinations/Pair 1.07
Mean z-score -1.43
Structure conservation index 0.95
SVM decision value 1.46
SVM RNA-class probability 0.955760
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17459364 101 + 27905053
ACAUGUGGCAUGUGGAAGCCAGACUCGAAUGUUCGGUGAGAGCGGCUUUUGCUUUUGGCCCCCAACCCUUUUCGCUCUCUUCGGCUUGCCGGCUACAAAUC
...((((((.((.(.(((((..((.(((....)))))(((((((((....))..((((...)))).......)))))))...))))).))))))))).... ( -35.10)
>DroSec_CAF1 11779 101 + 1
ACAUGUGGCAUGUGGAAGCCAGACUCGAAUGUUCGGUGAGAGCGGCUUUUGCUUUUGGCCCCCAACCCUUUUCGCUCUCUUCGGCUUGCCGGCUACAAAUC
...((((((.((.(.(((((..((.(((....)))))(((((((((....))..((((...)))).......)))))))...))))).))))))))).... ( -35.10)
>DroSim_CAF1 12937 101 + 1
ACAUGUGGCAUGUGGAAGCCAGACUCGAAUGUUCGGUGAGAGCGGCUUUUGCUUUUGGCCCCCAACCCUUUUCGCUCUCUUCGGCUUGCCGGCUGCAAAUC
...((..((.((.(.(((((..((.(((....)))))(((((((((....))..((((...)))).......)))))))...))))).)))))..)).... ( -34.20)
>DroEre_CAF1 11953 99 + 1
CCAUGUGGCAUGUGGAAGCCAGACUCGAAUGUUCGGUGAGAGCGGCUUUUGCUGUUGGCCC-CAUCCCUU-UUGCUCUCUUCGGCUUGCCGGCUACAAAUC
...((((((.((.(.(((((..((.(((....)))))(((((((((....)))..((....-))......-..))))))...))))).))))))))).... ( -33.30)
>DroYak_CAF1 11942 100 + 1
CCAUGUGGCAUGUGGAAGCCAGACUCGAAUGUUCGGUGAGAGCGGCUUUUGCUUUUUGCUC-CAUCCCUUUUUGCUCUCUUCGGCUUGCCGGCUACAAAUC
...((((((.((.(.(((((..((.(((....)))))((((((((.....((.....))..-...))......))))))...))))).))))))))).... ( -31.00)
>consensus
ACAUGUGGCAUGUGGAAGCCAGACUCGAAUGUUCGGUGAGAGCGGCUUUUGCUUUUGGCCCCCAACCCUUUUCGCUCUCUUCGGCUUGCCGGCUACAAAUC
...((((((.((.(.(((((..((.(((....)))))(((((((((....))....((........))....)))))))...))))).))))))))).... (-32.14 = -31.94 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:40 2006