Locus 6644

Sequence ID 3R_DroMel_CAF1
Location 17,453,166 – 17,453,260
Length 94
Max. P 0.679059
window10814

overview

Window 4

Location 17,453,166 – 17,453,260
Length 94
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 81.71
Mean single sequence MFE -13.90
Consensus MFE -8.58
Energy contribution -9.18
Covariance contribution 0.60
Combinations/Pair 1.29
Mean z-score -1.92
Structure conservation index 0.62
SVM decision value 0.30
SVM RNA-class probability 0.679059
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17453166 94 + 27905053
AACA-UCUGUUAUUUACGAUUUUGAAAGGCAACUAACCACAUAAAAUCAGAUGAUAAGUAAAAAUCUGAAAAACAGGAACAA----AAUUAUUGUUAAA
....-((((((.((((.((((((...((....))...........(((....))).....)))))))))).))))))(((((----.....)))))... ( -14.80)
>DroSec_CAF1 5663 97 + 1
AACA-UUUGUCAUUUACGGUUUUGAAAGGCAACUAACCACAUAAAACCAGAUGAUAAGCAAAAAUCUGAAAUACAGGAACAAAA-AAAUUAAUGUUUAA
((((-((((((((((..(((((((...((.......))...)))))))))))))))).......((((.....)))).......-......)))))... ( -16.00)
>DroSim_CAF1 5716 98 + 1
AACA-UUUGUCAUUUACGGUUUUGAAAGGCAACUAACCACAUAAAACCAGAUGAUAAGCAAAAAUCUGAAAUACAGGAACAAAAAAAAUGAAUGUUUAA
((((-((((((((((..(((((((...((.......))...)))))))))))))).........((((.....))))............)))))))... ( -16.70)
>DroEre_CAF1 5740 88 + 1
AAAAUUCUAUAUUUUACGGUUUCGAAAGGCAACUAACCACGAAAAACCAGAUGAUAAGCAAAAAUCUGAAAUACAGGAACUUAA-AAAU----------
...........(((((.((((((...((....)).............(((((...........))))).......)))))))))-))..---------- ( -12.50)
>DroYak_CAF1 5686 87 + 1
AAAA-UCAGUCUUCUACAGUUUUGAAAGGCAACUAACCACAUAAAAUCAGAUGAUAAGCAAAAAUGUGAAAUACGGGAACUUAA-AAAU----------
....-((.((.((.((((.(((((..((....))...........(((....)))...))))).)))).)).))..))......-....---------- (  -9.50)
>consensus
AACA_UCUGUCAUUUACGGUUUUGAAAGGCAACUAACCACAUAAAACCAGAUGAUAAGCAAAAAUCUGAAAUACAGGAACAAAA_AAAU_A_UGUU_AA
.......((((((((..(((((((...((.......))...)))))))))))))))........((((.....))))...................... ( -8.58 =  -9.18 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:39 2006