Locus 6641

Sequence ID 3R_DroMel_CAF1
Location 17,448,183 – 17,448,283
Length 100
Max. P 0.811626
window10811

overview

Window 1

Location 17,448,183 – 17,448,283
Length 100
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 79.92
Mean single sequence MFE -26.99
Consensus MFE -19.05
Energy contribution -19.44
Covariance contribution 0.39
Combinations/Pair 1.09
Mean z-score -1.65
Structure conservation index 0.71
SVM decision value 0.65
SVM RNA-class probability 0.811626
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17448183 100 - 27905053
AGAACUUUCUCUGUGACCCGCGUGUACU------UAAAAGCCGCAUCACAGUCUGAGUUCUUGCUGAGUGCGAAAUCCUCGAAGCAACAUUAAGCGAAAUCAUGGG
.((((((...((((((...(((.((...------.....))))).))))))...))))))(((((...(((............)))......)))))......... ( -25.70)
>DroGri_CAF1 985 98 - 1
AGAACUCUCUCUGUGACUUGCGUGAACUUUCAUGUGAAAAUCGCAUCACAGUCUGAGUUCUUGCUGAGCGCGC-UUUCGCACCACAGCAUACAU-AAAAU------
(((((((...((((((..((((.....((((....))))..))))))))))...)))))))(((((.(.(((.-...))).)..))))).....-.....------ ( -31.80)
>DroSim_CAF1 854 100 - 1
AGAACUUUCUCUGUGACCCGCGUGUACU------UAAAAGCCGCAUCACAGUCUGAGUUCUUGCUGAGUGCGAAAUCCUCGAAGCAACAUUAAGCGAAAUAAUGGG
.((((((...((((((...(((.((...------.....))))).))))))...))))))(((((.....(((.....))).)))))(((((.......))))).. ( -26.60)
>DroEre_CAF1 852 100 - 1
AGAACUUUCUCUGUGACCUGCGUGUACU------GAAAAGCCGCAUCACAGUCUGAGUUCUUGCUGAGCGCGGAAUCCUCGAAGCAACAUAAAGCGAAAUCAUGGG
.((((((...((((((..((((.((...------.....))))))))))))...))))))(((((...((.((...)).)).)))))................... ( -28.30)
>DroYak_CAF1 858 100 - 1
AGAACUUUCUCUGUGACCUGCGUGUACU------UAAAAGCCGCAUCACAGUCUGAGUUCUUGCUGAGCGCGAAAUCCUCAAAGCAACAUAAAGCGAAAUCAUGGG
(((((((...((((((..((((.((...------.....))))))))))))...)))))))...(((.(((......................)))...))).... ( -25.35)
>DroMoj_CAF1 1205 101 - 1
AGAACUUUUUCUGUGACCUGCGUGAAUUCCUAUAUGCAAACCGCAUCACAGUCUGAGUUCUUGCUUAGCGCGCACUUCGCACAGCAACAUAAAA-AUCAA--AA--
.((((((...((((((..((((...................))))))))))...))))))(((((..(.(((.....))).)))))).......-.....--..-- ( -24.21)
>consensus
AGAACUUUCUCUGUGACCUGCGUGUACU______UAAAAGCCGCAUCACAGUCUGAGUUCUUGCUGAGCGCGAAAUCCUCAAAGCAACAUAAAGCGAAAUCAUGGG
(((((((...((((((..((((.((..............))))))))))))...)))))))(((.....))).................................. (-19.05 = -19.44 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:36 2006