Locus 6640

Sequence ID 3R_DroMel_CAF1
Location 17,446,880 – 17,446,991
Length 111
Max. P 0.924092
window10810

overview

Window 0

Location 17,446,880 – 17,446,991
Length 111
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 95.14
Mean single sequence MFE -21.34
Consensus MFE -18.54
Energy contribution -18.70
Covariance contribution 0.16
Combinations/Pair 1.12
Mean z-score -1.61
Structure conservation index 0.87
SVM decision value 1.16
SVM RNA-class probability 0.924092
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17446880 111 + 27905053
AAUUAAAAUUUGCUUAUAAAAUGUGGCUCUUCUUGCUACGACUUCUCCCUAUUUCUCUCGUGAGGCUGAGUUUUUGUAAAGUAGAUUUUGUGUUUUCGUUUUGUUUCGCUU
...((((((((((((((((((((((((.......))))))............(((..((....))..))).)))))).))))))))))))..................... ( -22.10)
>DroSec_CAF1 48401 111 + 1
AAUUAAAAUUUGCUUAUAAAAUGUGGCCUUUCUUUCUACGACUUCUCCCUAUUUCUCUCGUGAGGCUGAGUUUUUGUAAAGUAGAUUUUGUGUUCUCGUUUUGUUUCGCUU
...((((((((((((((((((..(((((((.......((((................)))))))))))...)))))).))))))))))))..................... ( -20.70)
>DroSim_CAF1 45566 111 + 1
AAUUAAAAUUUGCUUAUAAAAUGUGGCUCUUCUUUCUUCGACUUCUCCCUAUUUCUCUCGUGAGGCUGAGUUUUGGUAAAGUAGAUUUUGUGUUCUCGUUUUGUUUCGCUU
...........((..((((((((.(((.(.....(((...((((..((....(((..((....))..)))....))..)))))))....).)))..))))))))...)).. ( -18.20)
>DroEre_CAF1 47705 111 + 1
AAUUAAAAUUUGCUUAUAAAAUGUGGCUCUUCUUGCUACGACUUCUCCGUAUUUCUCUCGUGAGGCUGAGUUUUUGUAAAGUAAAUUUUGUGUUUUCGUUUUGUUUCUCUU
...((((((((((((((((((((((((.......))))))....(((.((....(((....))))).))).)))))).))))))))))))..................... ( -22.60)
>DroYak_CAF1 48200 111 + 1
AAUUAAAAUUUGCUUAUAAAAUGUGGCUCUUCUUGCUACGACUUCUCCCCAUUUCUCUCGUGAGGCUAAGUUUUUAUAAAGUAGAUUUUGUGUUUUCGUUUUGUUUCUCUU
...(((((((((((((((((..(((((.......)))))(((((..((.(((.......))).))..)))))))))).))))))))))))..................... ( -23.10)
>consensus
AAUUAAAAUUUGCUUAUAAAAUGUGGCUCUUCUUGCUACGACUUCUCCCUAUUUCUCUCGUGAGGCUGAGUUUUUGUAAAGUAGAUUUUGUGUUUUCGUUUUGUUUCGCUU
...(((((((((((((((((..(((((.......)))))(((((..((.(((.......))).))..)))))))))).))))))))))))..................... (-18.54 = -18.70 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:35 2006