Locus 6639

Sequence ID 3R_DroMel_CAF1
Location 17,446,192 – 17,446,306
Length 114
Max. P 0.842902
window10809

overview

Window 9

Location 17,446,192 – 17,446,306
Length 114
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 89.89
Mean single sequence MFE -13.76
Consensus MFE -10.48
Energy contribution -11.28
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.98
Structure conservation index 0.76
SVM decision value 0.76
SVM RNA-class probability 0.842902
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17446192 114 - 27905053
UUUAAACUCUCUCCUAGUAGUUAUAUAUUUAACUAAACGAUAGAUAAAAGCAACAAACAAAUGCAAAUCAUACAAUUGUAAAAAAAAAUCAAUAAAUAAACGAAGGAGAACCGC
.........((((((..((((((......))))))...(((........(((.........)))......(((....))).......))).............))))))..... ( -15.60)
>DroSec_CAF1 47708 107 - 1
UUUAAACUAUCUCCUAGUAGUUAUAUAUUUAACUAAACGAUAGAUAAAAGCAACAAACAAAUGCAAAUCAUACAAUUGUAAAAA---AUCA----AUAAGCAGAGGAGAACCAC
.........((((((..((((((......))))))...(((........(((.........)))......(((....)))....---))).----........))))))..... ( -15.90)
>DroSim_CAF1 44873 107 - 1
UUUAAACUAUCUCCUAGUAGUUAUAUAUUUAACUAAACGAUAGAUAAAAGCAACAAACAAAUGCAAAUCAUACAAUUGUAAAAA---AUCA----AUAAGCAAAGGAGAACCAC
.........((((((..((((((......))))))...(((........(((.........)))......(((....)))....---))).----........))))))..... ( -15.80)
>DroEre_CAF1 46993 111 - 1
UUUAAACUCUCGCCUAGAAGUUAUAUAUUUAACUAAACGAUAGAUAAAAGCAACAAACAAAUGCAAAUCAUACAAUUGUAUAAA---AUCAAUAAAUAAACGAAGGAGAACCAC
......((((..(.....(((((......)))))....(((........(((.........))).....((((....))))...---)))...........)..))))...... ( -11.10)
>DroYak_CAF1 47509 105 - 1
UUUAAACUCUCGCCUAGGAGUUAUAUAUUUAACUAAA------AUAAUAGCAACAAACAAAUGCAAAUCAUACAAUUGUAUAAA---ACCAAUAAAUAAACGAAGGAGAACCAC
....((((((......))))))...((((((......------......(((.........))).....((((....))))...---.....))))))......((....)).. ( -10.40)
>consensus
UUUAAACUCUCUCCUAGUAGUUAUAUAUUUAACUAAACGAUAGAUAAAAGCAACAAACAAAUGCAAAUCAUACAAUUGUAAAAA___AUCAAUAAAUAAACGAAGGAGAACCAC
.........((((((..((((((......))))))..............(((.........))).......................................))))))..... (-10.48 = -11.28 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:34 2006