| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,444,988 – 17,445,102 |
| Length | 114 |
| Max. P | 0.811147 |
| Location | 17,444,988 – 17,445,102 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 91.46 |
| Mean single sequence MFE | -36.86 |
| Consensus MFE | -30.52 |
| Energy contribution | -30.84 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.811147 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17444988 114 - 27905053 AACAGAGUUGGAAAACGCGCUAAACCGAAAAUCGCGUAUACAACAAGGGUAACGGCUGGCAGUGUUUCACGCGAUUUCGAAACGUUGAGAUCGUUGCCGCGGUCGCCGUGAAUU------ .((...((((....(((((.............)))))...))))...((..((.((.(((((((...)))((((((((((....)))))))))))))))).))..)))).....------ ( -36.32) >DroSec_CAF1 46463 114 - 1 AACAGAGUUGGAAAACGCGCGAAACCGAAAAUCGCGUAUACAACAAGGGUAACGGCUGGCAGUGUUUCACGCGAUUUCGAAACGUUGAGAUCGUUGCCGCGGUCGCCGUAAAUU------ .((...((((......((((((.........))))))...))))...((..((.((.(((((((...)))((((((((((....)))))))))))))))).))..)))).....------ ( -38.00) >DroSim_CAF1 43688 114 - 1 AACAGAGUUGGAAAACGCGCGAAACCGAAAAUCGCGUAUACAACAAGGGUAACGGCUGGCAGUGUUUCACGCGAUUUCGAAACGUUGAGAUCGUUGCCGCGGUCGCCGUAAGUU------ .((...((((......((((((.........))))))...))))...((..((.((.(((((((...)))((((((((((....)))))))))))))))).))..)))).....------ ( -38.00) >DroEre_CAF1 45922 120 - 1 AACAGAGUUGGAAAACGCGCGAUACCGAAAAUCGCGUAUACAACAAGGGUAACGGCUGGCAGUGUUUCACGCGAUUUCGAAACGUUGAGAUCGUUGCUGCGGCCGUCGGGAAUCGGAAUU ....((((((......(((((((.......)))))))...)))).......(((((((.(((((......((((((((((....))))))))))))))))))))))......))...... ( -38.10) >DroYak_CAF1 46301 120 - 1 AACAGUGUUGAAAAACGCACGAAACCGAAAAUCGCGUAUACAACAAGGGUAACGGCUGGCAGUGUUUCACGCGAUUUCGAAACGUUAAGUUCGUUGCUGCGGUCGUCGGGAAUUGGUAUU ....(((((....))))).(((..((((..(((((((.....))...((((((((((.....((((((..........))))))...)).)))))))))))))..))))...)))..... ( -33.90) >consensus AACAGAGUUGGAAAACGCGCGAAACCGAAAAUCGCGUAUACAACAAGGGUAACGGCUGGCAGUGUUUCACGCGAUUUCGAAACGUUGAGAUCGUUGCCGCGGUCGCCGUGAAUU______ ......((((....(((((.............)))))...))))...((..((.((.(((((((...)))((((((((((....)))))))))))))))).))..))............. (-30.52 = -30.84 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:33 2006