| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,444,613 – 17,444,708 |
| Length | 95 |
| Max. P | 0.827588 |
| Location | 17,444,613 – 17,444,708 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 80.15 |
| Mean single sequence MFE | -28.26 |
| Consensus MFE | -16.77 |
| Energy contribution | -18.97 |
| Covariance contribution | 2.20 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.827588 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17444613 95 + 27905053 GCGUGCUUUCUUUUUGCGCCGCAACUUCACAACAUGCUGUGUAUAUAUAAAUAAUAGGAGAGCGCGCGUGUGUGUGUG----UAUGUGUGUGUACACAA ((((((((((((..(((((.(((...........))).)))))............))))))))))))...((((((..----((....))..)))))). ( -32.44) >DroSec_CAF1 46116 93 + 1 GCGUGCUUUCUUUUUGCGCCGCAACUUCACAACAUGCUGUGUAUAUAUAAAUAAUAGGAGCGCGGACG--UGUGUGUG----UAUGUGUGUGUACACAA ..(((.........(((((((((((..((((.((((((((((...(((.....)))...)))))).))--)))))).)----).)))).)))))))).. ( -26.20) >DroSim_CAF1 43316 93 + 1 GCGUGCUUUCUUUUUGCGCCGCAACUUCACAACAUGCUGUGUAUAUAUAAAUAAUAGGAGCGCGCGCG--UGUGUGUG----UAUGUGUGUGUACACAA ((((((.(((((..(((((.(((...........))).)))))............))))).)))))).--((((((..----((....))..)))))). ( -27.94) >DroEre_CAF1 45551 91 + 1 GCGUGCUUUCUUUUUGCGCCGCAACUUCACAACAUGCUGUGUAUAUAUAAAUAAAGGGCGC--GCGUG--UGUGCGUG----UGUGUGUGUGUACACAA (((((((..((((.(((((.(((...........))).))))).........)))))))))--)).((--((((((..----(....)..)))))))). ( -29.40) >DroYak_CAF1 45938 83 + 1 GCGUGCUUUCUUUUUGCGCCGCAACUUCACAACAUGCUGUGUAUAUAUAAUUAAUGGGCGC--GUGUA--------------UGUGUGUGUGUACACAA ((((((.........))).))).....((((((((((.((.(((.........))).))))--)))).--------------))))((((....)))). ( -22.20) >DroPer_CAF1 53890 91 + 1 GCGUGCUUUCGUUUUGCGCCGCAACUUCACAACACUCUC---ACACAUU---CA--CGCGUGUGCACUUAUAUGUGUGCAUACGUAUGGGUGUAUACAA ((((((.........))).))).................---..(((((---((--..(((((((((........)))))))))..)))))))...... ( -31.40) >consensus GCGUGCUUUCUUUUUGCGCCGCAACUUCACAACAUGCUGUGUAUAUAUAAAUAAUAGGAGCGCGCGCG__UGUGUGUG____UAUGUGUGUGUACACAA ((((((.........))).)))...............((((((((((((....(((....(((((((....)))))))....))).)))))))))))). (-16.77 = -18.97 + 2.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:32 2006