Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 17,442,221 – 17,442,311 |
Length | 90 |
Max. P | 0.663134 |
Location | 17,442,221 – 17,442,311 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 81.64 |
Mean single sequence MFE | -19.35 |
Consensus MFE | -13.30 |
Energy contribution | -14.80 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.66 |
Structure conservation index | 0.69 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.663134 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17442221 90 - 27905053 GGCGGCUUU----------GGCGCAUAAUUUGGCCACACUAAUUAACAGUGCCGAAACGAACAACAAAAACACACAUGCCGCCACCAACACGAAUGCCUU (((((((((----------(((((.(((((.(......).)))))...))))))))..(.....)............))))))................. ( -22.90) >DroSec_CAF1 43743 90 - 1 GGCGGCUUU----------GGCGCAUAAUUUGGCCACACUAAUUAACAGUGCCGAAACGAACAACAAAAACACACAUGCCGCCACCAACACGAAUGCCUU (((((((((----------(((((.(((((.(......).)))))...))))))))..(.....)............))))))................. ( -22.90) >DroSim_CAF1 40921 90 - 1 GGCGGCUUU----------GGCGCAUAAUUUGGCCACACUAAUUAACAGUGCCGAAACGAACAACAAAAACACACAUGCCGCCACCAACACGAAUGCCUU (((((((((----------(((((.(((((.(......).)))))...))))))))..(.....)............))))))................. ( -22.90) >DroEre_CAF1 43143 90 - 1 GGCGGCUUU----------AGCGCAUAAUUUGGCCACACUAAUUAACAGUGCCGAAACGAACAACAAAAACACACAUGCCGCCACCAACACGAAUGCCUU ((((((.((----------(.....)))((((((.((...........)))))))).....................))))))................. ( -18.40) >DroYak_CAF1 43626 90 - 1 GUCAGCUUU----------GGCGCAUAAUUUGGCCACACUAAUUAACAGUGCCGAAACGAACAACAACAACACACAUGCCGCCACCAACACAAAUGCCUU ........(----------(((((((..((((((.((...........))))))))..(.....)..........))).)))))................ ( -13.90) >DroPer_CAF1 51364 85 - 1 ---GGCAUUGGAAAUUUCGGGCGCAUAAUUUGGCCACACUAAUUAGCAGAGAGGAG---AGCGAGAGAGACAGGC--GAAAAAACCGACCGAA------- ---((..((((...((((((((.((.....)))))...((.....((.........---.)).....)).....)--))))...))))))...------- ( -15.10) >consensus GGCGGCUUU__________GGCGCAUAAUUUGGCCACACUAAUUAACAGUGCCGAAACGAACAACAAAAACACACAUGCCGCCACCAACACGAAUGCCUU ((((((.............(((.((.....))))).((((.......))))..........................))))))................. (-13.30 = -14.80 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:28 2006