Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 17,439,398 – 17,439,504 |
Length | 106 |
Max. P | 0.961809 |
Location | 17,439,398 – 17,439,504 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 94.06 |
Mean single sequence MFE | -23.23 |
Consensus MFE | -19.59 |
Energy contribution | -20.35 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.07 |
Mean z-score | -1.87 |
Structure conservation index | 0.84 |
SVM decision value | 1.53 |
SVM RNA-class probability | 0.961809 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17439398 106 - 27905053 CAUGACUUAACGGACUUGAUAUUACCCUUUCCGUAAUUUUAAGAUCUUGUUAGUAGCAAUAUGAGCAACAAAGGUCUGCCCCUUAGUUGUUUUUAUUGCCCGUUCU ........(((((.(((((.(((((.......))))).)))))............((((((.(((((((.((((......)))).))))))).))))))))))).. ( -29.80) >DroSec_CAF1 40932 106 - 1 CGUGACUUAACGGACUUGAUAUUACCCUUUCCGUAAUUUUAAGACCUUGUUAGUAUCAAUAUGAGCAACAAAUGUCUGCCCCUUAGUUGUUUUUAUUGCCCGUUCU ........(((((.(((((.(((((.......))))).))))).............(((((.(((((((................))))))).))))).))))).. ( -19.59) >DroSim_CAF1 38010 106 - 1 CGUGACUUAACGGACUUGAUAUUACCCUUUCCGUAAUUUUAAGACCUUGUUAGUAGCAAUAUGAGCAACAAAUGUCUGCCCCUUAGUUGUUUUUAUUGCCCGUUUU ........(((((.(((((.(((((.......))))).)))))............((((((.(((((((................))))))).))))))))))).. ( -23.49) >DroEre_CAF1 40373 106 - 1 CAUGACUUAACGGACAUGAUAAUACCCUUUCCGCAAUUUAAAGACCCUGUUAGUAGCAAUAUGAGCAACAAAUGUCUGCCCCUUAGUUGUUUUUAUUGUCCGUUCU ........(((((((.................((.(((...((...))...))).))((((.(((((((................))))))).))))))))))).. ( -17.59) >DroYak_CAF1 40855 106 - 1 CAUAACUUAACGGACUUGAUAUUACCCUUUCCGUAAUUUCAAGACCCUGUUUGUAGCAAUAUGAGCAACAAAUGUGUGCCCCUUAGUUGUUUUUAUUGCCCGUUCU ........(((((.(((((.(((((.......))))).)))))............((((((.(((((((................))))))).))))))))))).. ( -25.69) >consensus CAUGACUUAACGGACUUGAUAUUACCCUUUCCGUAAUUUUAAGACCUUGUUAGUAGCAAUAUGAGCAACAAAUGUCUGCCCCUUAGUUGUUUUUAUUGCCCGUUCU ........(((((.(((((.(((((.......))))).)))))............((((((.(((((((................))))))).))))))))))).. (-19.59 = -20.35 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:23 2006