| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,432,822 – 2,432,936 |
| Length | 114 |
| Max. P | 0.596428 |
| Location | 2,432,822 – 2,432,936 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 91.81 |
| Mean single sequence MFE | -29.89 |
| Consensus MFE | -23.37 |
| Energy contribution | -23.27 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.596428 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2432822 114 - 27905053 AGUGAUGCGAAGUGGCGACUACGAAAGGAAGCUGACCGGAAGGACAGCAAAUAGCAAUCUCGCUAACCUUUUCAAAAACGUGCAACAUGAAUGUACUAUGUGUACAUUGAAACG .(((.((((..((((...))))((((((..((((.((....)).))))...((((......))))..)))))).......)))).))).(((((((.....)))))))...... ( -34.80) >DroSec_CAF1 145453 114 - 1 AGUGAUGCGAAGCGCAGAUUACGAAAGGAAGCUGACCGGAAGGACAGCAAAUAGCUAUCUCGCUAAUCUUUUAAAAAACAUGCAAGAAGAAUGUCCUAUGUGUACAUUAAAACG ((((.((((...))))...((((..((((.((((.((....)).))))...((((......)))).((((((............))))))...))))...))))))))...... ( -26.60) >DroSim_CAF1 139798 114 - 1 AGUGAUGCGAAGCGCAGAUUACGAAAGGAAGCUGACCGGAAGGACAGCAAAGAGCUAUCUUGCUAAUCUUUUAAAAAACAUGCAAGAAGAAUGUCCUAUGUGUACAUUGAAACG ((((.((((...))))...((((..((((.((((.((....)).)))).........((((((..................))))))......))))...))))))))...... ( -28.27) >consensus AGUGAUGCGAAGCGCAGAUUACGAAAGGAAGCUGACCGGAAGGACAGCAAAUAGCUAUCUCGCUAAUCUUUUAAAAAACAUGCAAGAAGAAUGUCCUAUGUGUACAUUGAAACG (((((((((.((..........((((((..((((.((....)).))))...((((......)))).)))))).....((((.........)))).)).))))).))))...... (-23.37 = -23.27 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:42 2006