Locus 6629

Sequence ID 3R_DroMel_CAF1
Location 17,432,053 – 17,432,161
Length 108
Max. P 0.518184
window10792

overview

Window 2

Location 17,432,053 – 17,432,161
Length 108
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 79.60
Mean single sequence MFE -23.89
Consensus MFE -11.08
Energy contribution -11.28
Covariance contribution 0.20
Combinations/Pair 1.30
Mean z-score -1.95
Structure conservation index 0.46
SVM decision value -0.03
SVM RNA-class probability 0.518184
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17432053 108 - 27905053
-------AGCGCUUAUAAGUGAAAUGCAAUUCACGAAUUCGU----GGUGUUUUUACUAUAACAUUGUUUGUUCAGCUUUCACUGGAUAGCAGUUUAGGGUUAUCACAAAAAAA-AAUGA
-------.....(((((.((((((.(((..(((((....)))----))))))))))))))))((((.(((((.(((......)))((((((........)))))))))))....-)))). ( -22.90)
>DroSec_CAF1 36030 107 - 1
-------UACGCUCAUAAGUGAAAUGCAAUUCACGAACUCGU----GGUGUUUUUACUAUAACAUUGUUUAUUCAGCUUUCGCUGGAUAGCAGUUAAGGGAUACCACGAAAAAA--ACGA
-------..((.......(((((......)))))....((((----(((((((((....((((..((((.(((((((....)))))))))))))))))))))))))))).....--.)). ( -31.50)
>DroSim_CAF1 33173 109 - 1
-------UACGCUCAUAAGUGAAAUGCAAUUCACGAACUCGU----GGUGUUUUUACCAUAACAUUGUUUAUUCAGCUUUCACUGGAUAGCAGUUAAGGGAUACCACAAAAAAAAAAAGA
-------...........(((((......)))))......((----((((((....((.((((..((((.((((((......)))))))))))))).))))))))))............. ( -25.60)
>DroEre_CAF1 35721 115 - 1
UA----AAACACUCAUAAGUGCAAUGCAAUUCAUGAACCCCCGUUUUUUAUUUCUGUUAUAACACUGUUUAUUCAACUUUUACUAGAUAACAGUUAAGGGAUACCAUAAAAAAA-AACAA
..----......((((...(((...)))....))))......(((((((....(((((((......(((.....))).........)))))))....((....)).....))))-))).. ( -14.06)
>DroYak_CAF1 36168 113 - 1
UAUAUCAAACGCUCAUAAGUGCAAUGCAAUUCAUGAACUCGU----AAGGGUUUUGCUAUAACAUUGCUUAUUCAGCUUUUACUGGAAAGCAGCUAAGGGAUACCA--AAAAAA-AUUGA
....((((..(((.......((((((........((((((..----..))))))........)))))).......((((((....)))))))))...((....)).--......-.)))) ( -25.39)
>consensus
_______AACGCUCAUAAGUGAAAUGCAAUUCACGAACUCGU____GGUGUUUUUACUAUAACAUUGUUUAUUCAGCUUUCACUGGAUAGCAGUUAAGGGAUACCACAAAAAAA_AACGA
...........(((....(((((......))))).............................((((((.((((((......))))))))))))...))).................... (-11.08 = -11.28 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:18 2006