Locus 6625

Sequence ID 3R_DroMel_CAF1
Location 17,425,365 – 17,425,463
Length 98
Max. P 0.770051
window10785

overview

Window 5

Location 17,425,365 – 17,425,463
Length 98
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 94.90
Mean single sequence MFE -26.48
Consensus MFE -24.94
Energy contribution -25.14
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.19
Structure conservation index 0.94
SVM decision value 0.53
SVM RNA-class probability 0.770051
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17425365 98 - 27905053
GACGGCCGCAAGGCAAGCGAAAGAGACGGAGAGAGCAGCAGUCUGCGAAUGCGAUCGAGCUGAAAAUGCAGACUUAAUUCGCCGAGAGUGAGAAUUUU
....(((....)))...(....)...(((...(((....((((((((...((......))......))))))))...))).))).............. ( -26.60)
>DroSec_CAF1 29253 98 - 1
GACGGCCGCAAGGCAAGCGAAAGAGACGGAGAGAGCAGCAGUCUGCGAAUGCGAUCGAGCUGAAAAUGCAGACUUAAUUCGCCGAGAGUGAGAAUUUU
....(((....)))...(....)...(((...(((....((((((((...((......))......))))))))...))).))).............. ( -26.60)
>DroSim_CAF1 26617 98 - 1
GACGGCCGCAAGGCAAGCGAAAGAGACGGAGAGAGCAGCAGUCUGCGAAUGCGAUCGAGCUGAAAAUGCAGACUUAAUUCGCCGAGAGUGAGAAUUUU
....(((....)))...(....)...(((...(((....((((((((...((......))......))))))))...))).))).............. ( -26.60)
>DroEre_CAF1 29106 98 - 1
GACGGCCGGAAGGCAAAUGAAAGAGACGGACAGAGCCGCAGUCUGCGAAUGCGAUCGAGCUAAAAAUGCAGACUUAAUUCGCCGAGAGUGAGAAUUUU
....(((....)))..........(.(((......))))((((((((...((......))......)))))))).(((((.((....).).))))).. ( -26.30)
>DroYak_CAF1 27101 98 - 1
GACGGCCGGAAGGCAAACGAAAAAGACGGACAUAGUCGCAGUCUGCGAAUGCGAUCGAGCUAAAAAUGCAGACUUAAUUCGCCGAGAGUGAGAAUUUC
..(((((....)))...((((...(((.......)))..((((((((...((......))......))))))))...)))).)).............. ( -26.30)
>consensus
GACGGCCGCAAGGCAAGCGAAAGAGACGGAGAGAGCAGCAGUCUGCGAAUGCGAUCGAGCUGAAAAUGCAGACUUAAUUCGCCGAGAGUGAGAAUUUU
.((.(((....)))............(((...(((....((((((((...((......))......))))))))...))).)))...))......... (-24.94 = -25.14 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:11 2006