| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,424,904 – 17,425,005 |
| Length | 101 |
| Max. P | 0.613331 |
| Location | 17,424,904 – 17,425,005 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 88.45 |
| Mean single sequence MFE | -18.40 |
| Consensus MFE | -15.24 |
| Energy contribution | -15.80 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.613331 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17424904 101 + 27905053 UUAUAACUCAUCAAGUACAAACUAUUUAACGUUUGCUGUGUUAAUUGCACAGCAAGCUCCGUCUUUCAAUUAUCCUAUCGGUUACAAAGUCGCCUUAAUAU ..............................(((((((((((.....)))))))))))..((.((((.......((....))....)))).))......... ( -19.90) >DroSec_CAF1 28790 101 + 1 UUAUAACUCAUCAAGUACAAACUAUUUAACGUUUGCAGUGCUAAUUGCACAGCAAGCUCCGUCUUUCAAUUUUCCUAUCGGUUACAAAGUCGACUUAAUAU ............((((..............((((((.((((.....)))).))))))..((.((((.......((....))....)))).))))))..... ( -19.10) >DroEre_CAF1 28619 100 + 1 UUAUAACUCAUUAAGUACAAACUAUUAAACGUUCGCUGUGUUUAUAGCUCAGCAAGCUCCGU-CUUUAAUUGUCCUAUCAGUUACGAUGUCGCCUCAAUAU ..................................((((.((.....)).))))..((..(((-(..((((((......)))))).))))..))........ ( -16.20) >consensus UUAUAACUCAUCAAGUACAAACUAUUUAACGUUUGCUGUGUUAAUUGCACAGCAAGCUCCGUCUUUCAAUUAUCCUAUCGGUUACAAAGUCGCCUUAAUAU ...(((((.....(((....))).......(((((((((((.....)))))))))))......................)))))................. (-15.24 = -15.80 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:10 2006