| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,424,773 – 17,424,874 |
| Length | 101 |
| Max. P | 0.660932 |
| Location | 17,424,773 – 17,424,874 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 92.51 |
| Mean single sequence MFE | -20.72 |
| Consensus MFE | -17.68 |
| Energy contribution | -18.90 |
| Covariance contribution | 1.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.660932 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17424773 101 - 27905053 CCAUCUGUCGUUUAAUUUAUUUUCAUUUUUGUAUAAGUAAUCGACGGCGGUAACCCCUUCAAUGACAAUUU-GUUGCCGCCUUUCGCUGUC-CCAACUCCCGU ......((((.(((.(((((...((....)).)))))))).))))(((((((((.................-)))))))))..........-........... ( -21.23) >DroSec_CAF1 28659 101 - 1 CCAUCUGUCGUUUAAUUUAUUUUCAUUUUUGUUUAAGUAAUCGGCGGCGGUAACCCCUUCAAUGACAAUUU-GUUGCCGCCUUUCGCUGUC-CCAACUCCCUU ......((((.(((.((((....((....))..))))))).))))(((((((((.................-)))))))))..........-........... ( -19.23) >DroYak_CAF1 26530 100 - 1 -CAUCUGUCAUUUAAUUUAUUUUCAUUUUUGUAUAAGUAAAC--CGGCGGUAACCCCUUCAAUGGCAAUUUGGUUGCCGCCAUUCGCUGUCCCCAACUCCCUU -..............(((((((.((....))...))))))).--.((((((((((((......))......))))))))))...................... ( -21.70) >consensus CCAUCUGUCGUUUAAUUUAUUUUCAUUUUUGUAUAAGUAAUCG_CGGCGGUAACCCCUUCAAUGACAAUUU_GUUGCCGCCUUUCGCUGUC_CCAACUCCCUU ......((((.(((.(((((...((....)).)))))))).))))(((((((((..................)))))))))...................... (-17.68 = -18.90 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:09 2006