Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,431,960 – 2,432,079 |
Length | 119 |
Max. P | 0.833532 |
Location | 2,431,960 – 2,432,079 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.32 |
Mean single sequence MFE | -37.30 |
Consensus MFE | -34.12 |
Energy contribution | -34.00 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.06 |
Mean z-score | -1.41 |
Structure conservation index | 0.91 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.833532 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2431960 119 - 27905053 AUGGGCUACACGUGCUGCUCGAAAAUGUUUAUGGCGCCCACUGUGGA-AACUGGAAGCUGUGGAAAAGUGCAGCUCGAAUAUUUUCUAGGGCGGAACUCUUGAGCUAAACGAGUUAGCAU ....(((((.(((...((((((....((((....(((((....((((-((.((..((((((........))))))....)).)))))))))))))))..))))))...))).).)))).. ( -37.00) >DroSec_CAF1 144608 119 - 1 AUGGGCUACACGUGCUGCUCGAAAAUGUUUAUGGCGCCCACUGUGGA-AACUGGAAGCUGUGGAAAAGUGCAGCUCGAAUAUUUUCUAGGGCGGAACUCUUGAGCUAAACGAGUUAGCAU ....(((((.(((...((((((....((((....(((((....((((-((.((..((((((........))))))....)).)))))))))))))))..))))))...))).).)))).. ( -37.00) >DroSim_CAF1 138914 119 - 1 AUGGGCUACACGUGCUGCUCGAAAAUGUUUAUGGCGCCCACUGUGGA-AACUGGAAGCUGUGGAAAAGUGCAGCUCGAAUAUUUUCUAGGGCGGAACUCUUGAGCUAAACGAGUUAGCAU ....(((((.(((...((((((....((((....(((((....((((-((.((..((((((........))))))....)).)))))))))))))))..))))))...))).).)))).. ( -37.00) >DroEre_CAF1 140500 118 - 1 AUGGGCUACACGUGCUGCUCGAGAAUGUUUAUGGUGCCCACUGUGGA-AACUGGUAGCAGUGGA-AAGUGCAGCUCGAAUAUUUUCUAGGGCGGAACUCUUGAGCUAAACGAGUUAGCAU ....(((((.(((...((((((((..((((...(..(((((((((..-..).....))))))).-..)..).(((((((....)))..)))).))))))))))))...))).).)))).. ( -40.30) >DroYak_CAF1 134765 120 - 1 ACGGGCUACACGUGCUGCUUGAAAAUGUUUAUGGCGCCCACUGUGGAAAACUGGAAGCUGUGGAAAAGUGCAGCUCGAAUAUUUUCUAGGGCGGAACUCUUGAGCUAAACGAGUUAGCAU ....(((((.(((...(((..(....((((....(((((....(((((((.(.((.(((((........))))))).)...))))))))))))))))..)..)))...))).).)))).. ( -35.20) >consensus AUGGGCUACACGUGCUGCUCGAAAAUGUUUAUGGCGCCCACUGUGGA_AACUGGAAGCUGUGGAAAAGUGCAGCUCGAAUAUUUUCUAGGGCGGAACUCUUGAGCUAAACGAGUUAGCAU ....(((((.(((...((((((....((((....(((((..............(.((((((........)))))))(((....)))..)))))))))..))))))...))).).)))).. (-34.12 = -34.00 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:41 2006