Locus 6614

Sequence ID 3R_DroMel_CAF1
Location 17,410,201 – 17,410,306
Length 105
Max. P 0.661782
window10767

overview

Window 7

Location 17,410,201 – 17,410,306
Length 105
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 78.10
Mean single sequence MFE -27.33
Consensus MFE -13.41
Energy contribution -15.63
Covariance contribution 2.22
Combinations/Pair 1.13
Mean z-score -2.05
Structure conservation index 0.49
SVM decision value 0.27
SVM RNA-class probability 0.661782
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17410201 105 + 27905053
ACUUAUGCCCAGAGUUGGGAUCCACCAAUUCAC---UGGGCAACGAUCGUUUUAGC--ACCAGCAAAAAAGUGACUGAAGCUUUCGAGCUCGAGCACCUGAAUAGUUUUU
.....(((((((((((((......)))))))..---)))))).(((..((((((((--((..........))).)))))))..))).((....))............... ( -32.80)
>DroSec_CAF1 14248 103 + 1
ACUCAUGCCCAGAGUUGGGAUCCACCAAUUCGC---UGGCCAACGAUCGUUUUAGC--ACCAGCAA--AGGUGACUGAAGCUUUCGAGCUCGAGCACCUAAAUAGUUUUA
.(((..(((..(((((((......)))))))..---.)))...(((..((((((((--(((.....--.)))).)))))))..))).....)))................ ( -33.90)
>DroSim_CAF1 11547 103 + 1
ACUCAUGCCCAGAGUUGGGAUCCACCAAUUCGC---UGGCCAACGAUCGUUUUAGC--ACCAGCAA--AGGUGACUGAAGCUUUCGAGCUCGAGCACCUAAAUAGUUUUA
.(((..(((..(((((((......)))))))..---.)))...(((..((((((((--(((.....--.)))).)))))))..))).....)))................ ( -33.90)
>DroEre_CAF1 12993 96 + 1
ACUCAUGCCCAGAGUUGGGAUCCACCAAUUUGC---UGUCCAACGAUCGUUUU-GC--ACCAGCAA--AGGUGACUGAAGCUUUCG------AGCACCUAAAUAGUUUUA
.(((.((..(((.(((((......)))))...)---))..))..((..(((((-.(--(((.....--.))))...)))))..)))------))................ ( -22.20)
>DroYak_CAF1 11283 100 + 1
ACUCAUGCUCAGAGUUGGGAUCCACCAAUUUGCUGCUGUCCAACGAUCGUUUUAGC--ACCAGCAA--AGGUGACUGAAGCUUUCG------AGCACCUAAAUACUUUUA
.....(((((...((((((...((.(.....).))...))))))((..((((((((--(((.....--.)))).)))))))..)))------)))).............. ( -30.30)
>DroPer_CAF1 19421 84 + 1
AGUCAUUUCCAGAACUUAGAUCUGCCAAUUUGA---UUUC-------CGUUCCAGCCAACUAAAAA--AAGUG---------UACUAG-----UCACUUAAAUAGUUCUA
...........((((..(((((.........))---))).-------.)))).....(((((....--(((((---------......-----.)))))...)))))... ( -10.90)
>consensus
ACUCAUGCCCAGAGUUGGGAUCCACCAAUUCGC___UGGCCAACGAUCGUUUUAGC__ACCAGCAA__AGGUGACUGAAGCUUUCGAG____AGCACCUAAAUAGUUUUA
.....(((...(((((((......)))))))............(((..(((((((...(((........)))..)))))))..))).......))).............. (-13.41 = -15.63 +   2.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:54 2006