Locus 6612

Sequence ID 3R_DroMel_CAF1
Location 17,399,116 – 17,399,213
Length 97
Max. P 0.531968
window10763

overview

Window 3

Location 17,399,116 – 17,399,213
Length 97
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 87.17
Mean single sequence MFE -40.85
Consensus MFE -33.63
Energy contribution -34.55
Covariance contribution 0.92
Combinations/Pair 1.22
Mean z-score -1.69
Structure conservation index 0.82
SVM decision value -0.00
SVM RNA-class probability 0.531968
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17399116 97 + 27905053
GCCUCCCUUCCGAUGAAUCCAUUGGGUGGUGGAGGCCUUGGCGUACUCGCCGGUCGCAGCCAGUUCUCUUUAAGCAAGUUGGAUCGGUU--UCCGGCUC
(((..((.(((((((....))))))).)).(((((((..((((....))))((((.((((..(((.......)))..))))))))))))--)))))).. ( -40.60)
>DroSec_CAF1 3190 97 + 1
GCCUCCCUUCCGAUGAAUCCAUUGGGGGGUGGAGGCCUUGGCGUACUCGCCGGGCGCAGCCAGUUCUCUUUUAGCAAGUUGGAUCGGUU--UCCGGCUC
((...((((((((((....))))))))))(((..(((((((((....))))))).))..)))...........)).(((((((......--))))))). ( -41.20)
>DroSim_CAF1 5 97 + 1
GCCUCCCUCCCGAUGAAUCCAUUGGGGGGUGGAGGCCUUGGCGUACUCGCCGGGCGCAGCCAGUUCUCUUUUAGCAAGUUGGAUCGGUU--UCCGGCUC
((...((((((((((....))))))))))(((..(((((((((....))))))).))..)))...........)).(((((((......--))))))). ( -44.00)
>DroEre_CAF1 102 97 + 1
GCCUCCCUCCCGAUGAAUCCAUUGGGGGGUGGAGGCCUUGGCGUACUCGCCGGGCGCAGCCAGUUCUCUUUUAGCAAGUUGGAUCGGUU--UCCGGCUC
((...((((((((((....))))))))))(((..(((((((((....))))))).))..)))...........)).(((((((......--))))))). ( -44.00)
>DroYak_CAF1 5 97 + 1
GCCUCCCUUCCGAUGAAUCCAUUUGGAGGUGGGGGCCUUGGCGUACUCGCCGGGCGCAGCCAGUUCUCUUUUAGCAAGUUGGAUCGGUU--UCCGGCUC
(((((((((((((((....)).))))))).))))))(((((((....)))))))...((((.(((.......))).....(((......--))))))). ( -38.30)
>DroAna_CAF1 4249 97 + 1
GCCUCCCGACCGAUGAACCCGUUCGGAGGCGGUGGCCGCGCCGUGCUCUGCUGCCUCAGCCAGUUCUCCUUGCGUAUGUUG--UUGGCCGAGGCGCCUC
((((((((.((..((((....))))..))))).(((((((.(((((...((((...))))..((.......))))))).))--.))))))))))..... ( -37.00)
>consensus
GCCUCCCUUCCGAUGAAUCCAUUGGGGGGUGGAGGCCUUGGCGUACUCGCCGGGCGCAGCCAGUUCUCUUUUAGCAAGUUGGAUCGGUU__UCCGGCUC
(((((((((((((((....)))).))))).))))))............((((((...((((.((((.(((.....)))..)))).))))..)))))).. (-33.63 = -34.55 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:50 2006