Locus 6611

Sequence ID 3R_DroMel_CAF1
Location 17,396,188 – 17,396,308
Length 120
Max. P 0.880123
window10762

overview

Window 2

Location 17,396,188 – 17,396,308
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 98.61
Mean single sequence MFE -25.55
Consensus MFE -25.20
Energy contribution -24.95
Covariance contribution -0.25
Combinations/Pair 1.03
Mean z-score -2.17
Structure conservation index 0.99
SVM decision value 0.91
SVM RNA-class probability 0.880123
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17396188 120 + 27905053
AAGCCAAACUUUCCUGAAUAUAUAUCGCUAUAUAAGUAGUUGAUAUUUGGCGUUGUCGCGAAAGCGCUCAUAUUUCCACUUUAUGUUACAACAAUUUAGUUAAUUCGACUACUAAAUAUA
..((((((.((..(((..((((((....))))))..)))..))..))))))((((((((....)))..((((.........))))..))))).(((((((..........)))))))... ( -25.90)
>DroSim_CAF1 54629 120 + 1
AAGCCAAACUUUCCUGAAUAUAUAUCGCUAUAUAAGUAGUUGAUAUUUGGCGUUGUCGCGAAAGCGCUCAUAUUUCCACUUUAUGUUACAACAAUUUAGUUAAUUCGACUACUAAAUAUA
..((((((.((..(((..((((((....))))))..)))..))..))))))((((((((....)))..((((.........))))..))))).(((((((..........)))))))... ( -25.90)
>DroEre_CAF1 48631 120 + 1
AAGCCAAACUUUCCUGAAUAUAUAUCGCUAUAUAAGUAGUUGAUAUUUGGCGUUGUCGCGAAAGCGCUCAUGUUUCCACUUUAUGUUACAACAAUUUAGUUAAUUCGACUACUAAAUAUA
..((((((.((..(((..((((((....))))))..)))..))..))))))((((((((....)))..((((.........))))..))))).(((((((..........)))))))... ( -25.60)
>DroYak_CAF1 62847 120 + 1
AAGCCAAACUUUCCUGAAUAUAUAUCGCUAUACAAGUAGUUGAUAUUUGGCGUUGUCGCGAAAGCGCUCAUGUUUCCACUUUAUGUUACAACAAUUUAGUUAAUUAGACUACUAAAUAUA
..(((((((......)......(((((((((....)))).)))))))))))((((((((....)))..((((.........))))..))))).(((((((..........)))))))... ( -24.80)
>consensus
AAGCCAAACUUUCCUGAAUAUAUAUCGCUAUAUAAGUAGUUGAUAUUUGGCGUUGUCGCGAAAGCGCUCAUAUUUCCACUUUAUGUUACAACAAUUUAGUUAAUUCGACUACUAAAUAUA
..(((((((......)......(((((((((....)))).)))))))))))((((((((....)))..((((.........))))..))))).(((((((..........)))))))... (-25.20 = -24.95 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:49 2006