Locus 6610

Sequence ID 3R_DroMel_CAF1
Location 17,392,770 – 17,392,864
Length 94
Max. P 0.516226
window10761

overview

Window 1

Location 17,392,770 – 17,392,864
Length 94
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 74.95
Mean single sequence MFE -17.36
Consensus MFE -7.60
Energy contribution -7.80
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.75
Structure conservation index 0.44
SVM decision value -0.03
SVM RNA-class probability 0.516226
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17392770 94 + 27905053
ACCUGU---GUAUCCGCCUUGUUUCACGUUAGGUCUAGUUUUUGAAUUUCUUUUGGAUUUCUUCCAGUACAUUUUACCAUGUGCUCCAUCCAUCCAA
((((((---(...(......)...)))...))))..................((((((.......(((((((......)))))))......)))))) ( -13.12)
>DroSec_CAF1 41302 86 + 1
AUCCAUA--GAAUCCAGCUUGCUUGAUGUUUGGUCUAGCUAUUGAAC-----CUGGAUUUCUUCCAGUACAUUUUACCAUGUGCUGCA----UCCAA
.......--((((((((...(((.(((.....))).)))........-----))))))))....((((((((......))))))))..----..... ( -20.10)
>DroSim_CAF1 50724 86 + 1
AUCAGUA--GAAUCCAUCUUGUUUGAUGUUUUUUCUAGCUAUUGAAC-----UAGGAUUUCUUCCAGUACAUUUCACCAUGUGCUCCA----UCCAA
.((((((--(((..((((......))))..))......)))))))..-----..(((.....)))(((((((......)))))))...----..... ( -17.60)
>DroEre_CAF1 45228 84 + 1
AUCUUUUCAAU----CCCUCGGUUGGCGUUAGUGCUAGCUUUUGAAA-----CAGGAUUUUUUCCAGUACAUUUUACCAUGUGCUCCA----UCCAA
....((((((.----.....((((((((....)))))))).))))))-----..(((.....)))(((((((......)))))))...----..... ( -18.60)
>DroYak_CAF1 59178 88 + 1
AAUUGUUCAGUGUCCCCCUUGUUGGAUGUCAGUGCUAGCUAUUGAAU-----UAGUAUUUUUUCCAGUACAUUUUACCAUGUGCUCCA----UCCAA
.....................(((((((..((((((((........)-----)))))))......(((((((......))))))).))----))))) ( -17.40)
>consensus
AUCUGUA__GUAUCCACCUUGUUUGAUGUUAGUUCUAGCUAUUGAAC_____UAGGAUUUCUUCCAGUACAUUUUACCAUGUGCUCCA____UCCAA
......................................................(((........(((((((......))))))).......))).. ( -7.60 =  -7.80 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:48 2006