Locus 6608

Sequence ID 3R_DroMel_CAF1
Location 17,386,489 – 17,386,580
Length 91
Max. P 0.744432
window10756

overview

Window 6

Location 17,386,489 – 17,386,580
Length 91
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 79.26
Mean single sequence MFE -21.83
Consensus MFE -13.58
Energy contribution -14.13
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -1.71
Structure conservation index 0.62
SVM decision value 0.46
SVM RNA-class probability 0.744432
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17386489 91 - 27905053
GAAAUGGGUUGGCAUAUGAAAUGAGCUGCAAAUUGAUGGAGGAAUUAGCGCAGCAUAUUUAAUUUGAGC-U----------GGCAGCACCAACAACUACCAC-
.......((((((((.....))).(((((...(((((......)))))..((((.((.......)).))-)----------)))))).))))).........- ( -20.40)
>DroVir_CAF1 47610 100 - 1
CAAAUGCGUUGGCAUAUGAAAUGAGCUGCAAAUUGAUGGAGGAAUUAGCGCAGCAUAUUUGAUUUGUAUCUGAAAGCCUCAGGCAACAUCAACG---AUCCUC
......((((((((.((.(((((.(((((...(((((......))))).))))).))))).)).))).(((((.....)))))......)))))---...... ( -24.60)
>DroPse_CAF1 41599 81 - 1
GAAAUGGGUUGGCAUAUGAAAUGAGCUGCAAAUUGAUGGAGGAAUUAGCGCAGCAUAUUUAAUUUGU--------------GGCAACAACAAC-------AC-
.......((((.((((..(((((.(((((...(((((......))))).))))).)))))....)))--------------).))))......-------..- ( -21.30)
>DroGri_CAF1 40893 100 - 1
CAAAUGCGUUGGCAUAUGAAAUGAGCUGCAAAUUGAUGGAGGAAUUAGCGCAGCAUAUUUAAUUUGCAUGCAAAAGCCUCCAAAAGCAGCAAAG---AUCUUC
((.((((....)))).))......(((((.......((((((.......((((((.........))).))).....))))))...)))))....---...... ( -26.40)
>DroAna_CAF1 30067 92 - 1
GAAAUGGGUUGGCAUAUGAAAUGAGCUGCAAAUUGAUGGAGGAAUUAGCGCAGCAUAUUUAAUUUGUAC-U----------CGCAGAAACAACAAAAACCUCA
.....(((((........(((((.(((((...(((((......))))).))))).)))))..(((((..-.----------.))))).........))))).. ( -17.00)
>DroPer_CAF1 34234 81 - 1
GAAAUGGGUUGGCAUAUGAAAUGAGCUGCAAAUUGAUGGAGGAAUUAGCGCAGCAUAUUUAAUUUGU--------------GGCAACAACAAC-------AC-
.......((((.((((..(((((.(((((...(((((......))))).))))).)))))....)))--------------).))))......-------..- ( -21.30)
>consensus
GAAAUGGGUUGGCAUAUGAAAUGAGCUGCAAAUUGAUGGAGGAAUUAGCGCAGCAUAUUUAAUUUGUA__U__________GGCAACAACAAC____A_CAC_
.......(((((((.((.(((((.(((((...(((((......))))).))))).))))).)).)))..............(....)..)))).......... (-13.58 = -14.13 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:43 2006