| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,382,022 – 17,382,140 |
| Length | 118 |
| Max. P | 0.861818 |
| Location | 17,382,022 – 17,382,140 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.82 |
| Mean single sequence MFE | -50.88 |
| Consensus MFE | -31.75 |
| Energy contribution | -30.82 |
| Covariance contribution | -0.94 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.861818 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17382022 118 + 27905053 GGGAUGCUGCUGCAGCAGGGCCGCAUGAGGAUGCUGCAGUGGCUCCGGCCUUGCCAAGUGGCGCACAGCAUUCAGUUCCAGGAGCUUUCGCUGCUGGGCUGGCGAGGAGAAGCUUACG-- .(((.((..((((((((...((......)).))))))))..)))))..((((((((.((.((.....))........((((.(((....))).))))))))))))))...........-- ( -57.60) >DroVir_CAF1 43024 118 + 1 CGGAUGCUGCUGCAGCAAUGCCGCAUGGGGAUGCUGCAAAGGCUCCGGUCUUGCCAAAUGACGCACUGCGUUCAGUUCCAGUAGCUUGCGCUGUUGUGCUUGCAAUGGAAAGCCACCG-- .(((.(((..(((((((.(.((....)).).)))))))..))))))(((...((....((((((...))).))).(((((...((..((((....))))..))..))))).)).))).-- ( -45.50) >DroPse_CAF1 35746 120 + 1 CGGAUGCUGUUGCAGCAGGGCCGCGUGUGGAUGCUGCAGUGGCUCGGGGCGCGCCAACUGCCGCACGGCGCUCAGUUCAAGCAGCUUUCGCUGCUGAGCGGGCAAGGAGAAGUUGGUGUU (.((.((..((((((((...(((....))).))))))))..)))).)...((((((((((((....)))((((.(((((.(((((....)))))))))))))).......))))))))). ( -63.00) >DroGri_CAF1 36023 118 + 1 CGGAUGCUGUUGCAGUAGCGCUGCAUGUGGAUGCUGCAGUGGCUCCGGUCGUGCCAAAUGACGAACUGCAUUCAGUUCAAGUAGCUUGCGUUGCUGCGCUGGCAAGGGAAAGACGCCA-- ((((.((..((((((((.(((.....)))..))))))))..))))))(((...((.......((((((....)))))).....(((.((((....)))).)))...))...)))....-- ( -50.00) >DroWil_CAF1 40449 118 + 1 CGGAUGUUGUUGCAACAAUGCUGCAUGUGGAUGCUGCAAUGGUUCCGGUCUUGCCAAAUGACGUACUGCAUUGAGAUCGAGUAGUUUACGCUGUUGGGCGGGUGUUGGAAAAUUGCUG-- ((.((((....(((....))).)))).))......(((((..((((..(((((((.(((..((((((((.(((....))))))))..)))..))).)))))).)..)))).)))))..-- ( -36.80) >DroMoj_CAF1 38313 118 + 1 CGGAUGCUGUUGCAGCAGUGCGGCAUGUGGAUGCUGCAAUGGCUCCGGCCGUGCCAAGUGACGCACUGCGCUCAGUUCCAGCAGUUUGCGCUGCUGCGCUGGCAAUGGGAAGACGCCG-- ((((.((((((((((((...(.(....).).))))))))))))))))((.((((........)))).))((.((((..(((((((....))))))).))))))....((......)).-- ( -52.40) >consensus CGGAUGCUGUUGCAGCAGUGCCGCAUGUGGAUGCUGCAAUGGCUCCGGUCGUGCCAAAUGACGCACUGCAUUCAGUUCCAGUAGCUUGCGCUGCUGCGCUGGCAAGGGAAAGACGCCG__ ((((.((..((((((((...((......)).))))))))..)))))).....(((.((((........))))..(..(.((((((....)))))))..).)))................. (-31.75 = -30.82 + -0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:42 2006