Locus 6606

Sequence ID 3R_DroMel_CAF1
Location 17,381,387 – 17,381,507
Length 120
Max. P 0.616879
window10754

overview

Window 4

Location 17,381,387 – 17,381,507
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.39
Mean single sequence MFE -51.27
Consensus MFE -32.21
Energy contribution -32.83
Covariance contribution 0.62
Combinations/Pair 1.45
Mean z-score -2.04
Structure conservation index 0.63
SVM decision value 0.17
SVM RNA-class probability 0.616879
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17381387 120 - 27905053
ACAGCUGGGUGGCCUGGCGGCGGCGGCAGCUGCUGCGGCGGCCACCUCGCGUCAAAUUGCAGCAGCCACAUACGCGAGGAGCGACACCAGCGAGGAGCUCAACGUCGAUGGCAACGACGA
...(((((((.((.((((.((.(((((....))))).)).))))((((((((......((....)).....)))))))).)).)).)))))(((...)))..(((((.......))))). ( -59.20)
>DroVir_CAF1 42275 120 - 1
ACAACUGGGUGGCCUGGCAGCUGCAGCGGCUGCUGCGGCAGCCACAUCUCGCCAGAUUUCGGCUGCUAAUUAUGCGCGCAGCGACACCAGCGAAGAGCUGAACGUCGAUGGCAACGAUGA
....(((((.((..((((.((((((((....)))))))).))))..)).).))))...(((((.((.......))))((..((((..((((.....))))...))))...))..)))... ( -49.00)
>DroPse_CAF1 35099 120 - 1
ACAGCUGGGCGGACUGGCGGCCGCGGCGGCAGCUGCGGCUGCCACCUCACGACAGAUAGCGGCCGCUAAUUAUGCGCGCAGCGACACCAGCGAAGAGCUCAAUGUGGAUGGAAACGACGA
...((((.(((.(.((((((((((((.((((((....)))))).))((......))..))))))))))....).))).))))..(((.(((.....)))....)))..((....)).... ( -55.70)
>DroGri_CAF1 35229 120 - 1
ACAGCUGGGCGGAUUGGCGGCAGCGGCAGCUGCUGCAGCUGCCACUUCUCGCCAGAUCGCGGCUGCUAAUUAUGCGCGCAGCGACACCAGCGAAGAGCUCAAUGUCGAUGGCAACGAUGA
...((((.(((((((((((((((.((((((((...)))))))).))...(((......)))))))))))))...))).))))((((..(((.....)))...))))..((....)).... ( -53.40)
>DroWil_CAF1 39709 120 - 1
ACAAUUGGGCGGACUGGCGGCAGCGGCAGCUGCGGCGGCGGCCACAUCGCGGCAAAUUGCGGCCGCUAAUUAUGCACGAAGUGAUACCAGCGAGGAAUUAAAUGUCGAUGGCAAUGAUGA
.......(((.(.(((.(.(((((....))))).))))).))).(((((((((........)))))......(((.(((..((((.((.....)).))))....)))...)))..)))). ( -44.20)
>DroAna_CAF1 25602 120 - 1
ACAGCUUGGCGGUCUUGCGGCAGCGGCUGCUGCUGCGGCUGCCACUUCGAGGCAGAUUGCAGCAGCUAAUUAUGCGCGGAGUGACACCAGCGAGGAGUUAAAUGUUGAUGGAAAUGAUGA
.(((((((((..((((((.((.(((...(((((((((((((((.......))))).))))))))))......)))))((.......)).)))))).)))))..))))............. ( -46.10)
>consensus
ACAGCUGGGCGGACUGGCGGCAGCGGCAGCUGCUGCGGCUGCCACAUCGCGCCAGAUUGCGGCAGCUAAUUAUGCGCGCAGCGACACCAGCGAAGAGCUCAAUGUCGAUGGCAACGAUGA
...((((.(((.....((((((((....))))))))(((((((.................))))))).......))).))))....(((.(((.(.......).))).)))......... (-32.21 = -32.83 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:41 2006