Locus 6604

Sequence ID 3R_DroMel_CAF1
Location 17,373,994 – 17,374,084
Length 90
Max. P 0.583422
window10751

overview

Window 1

Location 17,373,994 – 17,374,084
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 97.07
Mean single sequence MFE -33.88
Consensus MFE -32.40
Energy contribution -31.92
Covariance contribution -0.48
Combinations/Pair 1.11
Mean z-score -1.12
Structure conservation index 0.96
SVM decision value 0.10
SVM RNA-class probability 0.583422
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17373994 90 - 27905053
UCCUGGCCGCCGCCGGCCGUCUGUCUCGCUCUCUGGCUGGAUAUAUCUUCCUGUUCCGGUGAAGUCGGGCGGCGAGAGGUUGUCAAAACA
...((((.(((.(..((((((((.((...((.((((..(((.......)))....)))).)))).))))))))..).))).))))..... ( -33.70)
>DroSec_CAF1 22831 88 - 1
UCCUGGCCGCCGCCGGCCGUCUGUCUC--UCUCUGGCUGGAUAUAUCUUCCUGUUCCGGUGAAGUCGGGCGGCGAGAGGUUGUCAAAACA
...((((.(((.(..((((((((.((.--((.((((..(((.......)))....)))).)))).))))))))..).))).))))..... ( -35.00)
>DroSim_CAF1 31444 88 - 1
UCCUGGCCGCCGCCGGCCGUCUGUCUC--UCUCUGGCCGGAUAUAUCUUCCUGUUCCGGUGAAGUCGGGCGGCGAGAGGUUGUCAAAACA
...((((.(((.(..((((((((.((.--((.((((..(((.......)))....)))).)))).))))))))..).))).))))..... ( -34.30)
>DroEre_CAF1 25820 88 - 1
UCCUGGCCGCCGCCGGUCGUCUGUCUC--UCUCUGGCCGGAUAUAUCUUCCUGUUCCGGUGAAGUCGGGCGGCGAGAGGUUGUCAAAACA
...((((.(((.(..((((((((.((.--((.((((..(((.......)))....)))).)))).))))))))..).))).))))..... ( -31.60)
>DroYak_CAF1 38700 88 - 1
UCCUGGCCGCCGUCGGCCGUCUGUCUC--UUUCUGGCCGGAUAUAUCUUCCUGUUCCGGUGAAGUCGGGCGGCGAGAGGUUGUCAAAACA
...((((.(((.((.((((((((...(--(((...((((((.(((......))))))))))))).))))))))..))))).))))..... ( -34.80)
>consensus
UCCUGGCCGCCGCCGGCCGUCUGUCUC__UCUCUGGCCGGAUAUAUCUUCCUGUUCCGGUGAAGUCGGGCGGCGAGAGGUUGUCAAAACA
...((((.(((.(..((((((((.((...((.((((..(((.......)))....)))).)))).))))))))..).))).))))..... (-32.40 = -31.92 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:38 2006