Locus 6601

Sequence ID 3R_DroMel_CAF1
Location 17,367,115 – 17,367,211
Length 96
Max. P 0.883542
window10747

overview

Window 7

Location 17,367,115 – 17,367,211
Length 96
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 82.53
Mean single sequence MFE -21.69
Consensus MFE -19.87
Energy contribution -20.37
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.78
Structure conservation index 0.92
SVM decision value 0.93
SVM RNA-class probability 0.883542
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17367115 96 + 27905053
CUUAAGUGCGGUUGCAAAUGUCAAUUGGCCGUUCGGCCAAAAUCGAACC-GGUUACCGAUUGCAUUUUAAUUUUCCUCUUCCAC--AUCCACUUCCACA
...(((((((((((..........((((((....))))))(((((...)-))))..))))))))))).................--............. ( -21.30)
>DroVir_CAF1 28037 85 + 1
CUUAAGUGCGGUUGCAAAUGUCAAUUGGCCGUUUGGCCAAGAGCGAACC-GGUAACAGGCUGCAUUUUAAUUUUCUUUUGCCCUGC-------------
........(((((((.........((((((....))))))..)).))))-)....((((..(((..............))))))).------------- ( -20.64)
>DroPse_CAF1 21418 86 + 1
CUUAAGUGCGGUUGCAAAUGUCAAUUGGCCGUUCGGCCAAAAUCGAACCUGGUAACCGAUUGCAUUUUAAUUUUCCAUCU--------CCC-----UUU
...((((((((((((.....((..((((((....))))))....)).....))))))....)))))).............--------...-----... ( -21.60)
>DroYak_CAF1 25593 90 + 1
CUUAAGUGCGGUUGCAAAUGUCAAUUGGCCGUUCGGCCAAAAUCGAACC-GGUUACCGAUUGCAUUUUAAUUUUCCACUU--------CCGCUUCCUCA
...(((((.(((((.(((((.(((((((((((((((......))))).)-))...)))))))))))))))))...)))))--------........... ( -22.50)
>DroAna_CAF1 13033 85 + 1
CUUAAGUGCGGUUGCAAAUGUCAAUUGGCCGUUCGGCCAAAAUCGAACC-GGUAACCGAUUGCAUUUUAAUUUUCCACUUCU-------------CCCA
...(((((.(((((.(((((.(((((((((((((((......))))).)-))...)))))))))))))))))...)))))..-------------.... ( -22.50)
>DroPer_CAF1 13940 86 + 1
CUUAAGUGCGGUUGCAAAUGUCAAUUGGCCGUUCGGCCAAAAUCGAACCUGGUAACCGAUUGCAUUUUAAUUUUCCAUCU--------CCC-----UUU
...((((((((((((.....((..((((((....))))))....)).....))))))....)))))).............--------...-----... ( -21.60)
>consensus
CUUAAGUGCGGUUGCAAAUGUCAAUUGGCCGUUCGGCCAAAAUCGAACC_GGUAACCGAUUGCAUUUUAAUUUUCCACUU________CC______UCA
...((((((((((((.....((..((((((....))))))....)).....))))))....))))))................................ (-19.87 = -20.37 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:34 2006