Locus 6600

Sequence ID 3R_DroMel_CAF1
Location 17,366,225 – 17,366,319
Length 94
Max. P 0.666369
window10746

overview

Window 6

Location 17,366,225 – 17,366,319
Length 94
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 75.53
Mean single sequence MFE -30.72
Consensus MFE -14.44
Energy contribution -15.19
Covariance contribution 0.75
Combinations/Pair 1.17
Mean z-score -1.91
Structure conservation index 0.47
SVM decision value 0.28
SVM RNA-class probability 0.666369
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17366225 94 - 27905053
C--UGGA--AAAGCCUUCGGGAUGGG------------ACCAAAAAGAACUUUCCCAUAGCCAAGUGCUUUGGCACAUUGUAGCAUCUCGUGUGGGCUACAUUUUUAGAA
(--((((--(((((((.(((((((((------------(.............))))...(((((((((....)))).)))..))))))))...)))))...))))))).. ( -29.72)
>DroPse_CAF1 20516 109 - 1
AUGAGGAAGGAAGGCCUCGGGAUGGGUUUGGAGCAUAAACCCAAAGGAAUUUCCGAAU-GGCUAGUGCUUAGGCACAUUGUAGCAUCUUGUCUAGGUAACAUUUUCGAGC
.((((((.(...((((((((((((((((((.....)))))))).......))))))..-))))..((((((((((...((...))...)))))))))).).))))))... ( -33.11)
>DroSec_CAF1 14590 94 - 1
C--UGGA--AAAGCCUUCGGGAUGGG------------ACCAAAAAGAACUUUCCCAUAGCCAAGUGCUUUGGCACAUUGUAGCAUCUCGUGUGGGCUACAUUUUCCGAA
.--((((--(((((((.(((((((((------------(.............))))...(((((((((....)))).)))..))))))))...)))))....)))))).. ( -30.82)
>DroEre_CAF1 17377 94 - 1
C--CGGA--AAAGCCUGCGGGAUGGG------------ACCAAAAGGAACUUUCCUUUAGCCAAGUGCUUUGGCACAUUGUAGCAUCUCGUGUGGGCUACAUUUUCCGAA
.--((((--(((((((((((((((((------------....((((((....))))))..))..((((....)))).......))))))))..)))))....)))))).. ( -37.30)
>DroYak_CAF1 24680 94 - 1
C--UGGA--AAAGCCUUCGGGAUGGG------------ACCAAAAAGAACUUUCCUGUAGCCAAGUGCUUUGGAACAUUGUAGCAUUUCGUGUGGGCUACAUUUUUCGAA
.--.(((--((..((....)).((..------------..))........)))))((((((((((((((............)))))))......)))))))......... ( -22.60)
>DroPer_CAF1 13033 104 - 1
AUGAGGAAGGAAGGCCUCGGGAUGGGUUUGGAGCAUAAACCCAAAGGAAUUUCCGAAU-G-----UGCUUAGGCACAUUGUAGCAUCUUGUCUAGGUAACAUUUUCGAGC
....(((((....(((((((((((((((((.....)))))))...((.....)).(((-(-----(((....))))))).....))))))...))))....))))).... ( -30.80)
>consensus
C__UGGA__AAAGCCUUCGGGAUGGG____________ACCAAAAAGAACUUUCCAAUAGCCAAGUGCUUUGGCACAUUGUAGCAUCUCGUGUGGGCUACAUUUUCCGAA
...........(((((.(((((((((.............)).......................((((....)))).......)))))))...)))))............ (-14.44 = -15.19 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:33 2006