Locus 660

Sequence ID 3R_DroMel_CAF1
Location 2,426,006 – 2,426,097
Length 91
Max. P 0.573123
window1045

overview

Window 5

Location 2,426,006 – 2,426,097
Length 91
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 87.58
Mean single sequence MFE -33.27
Consensus MFE -24.48
Energy contribution -24.98
Covariance contribution 0.50
Combinations/Pair 1.12
Mean z-score -2.93
Structure conservation index 0.74
SVM decision value 0.08
SVM RNA-class probability 0.573123
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2426006 91 - 27905053
GGC------UCCCACACAUGUGGCUGAUGCCUUGGGCCAUCAUCGUUGACAACAAUAUCAGUGGCUUUCGAAACAGCGGCAGCCGCAGGAGCAAAAA------
.((------(((......((((((((.(((.(((((((((....((((....))))....))))))..)))....))).))))))))))))).....------ ( -32.50)
>DroSec_CAF1 138928 91 - 1
GGC------UCCCACACAUGUGGCUGAUGCUUUGGGCCAUCAUUGUUGACAACAAUAUCAGUGGUUUUCGAAACAGCGGCAGCCGCAGGAGCAAAAA------
.((------(((......((((((((.(((((((((((((...(((((....)))))...)))))..))))...)))).))))))))))))).....------ ( -34.40)
>DroSim_CAF1 132903 91 - 1
GGC------UCCCACACAUGUGGCUGAUGCUUUGGGCCAUCAUUGUUGACAACAAUAUCAGUGGCUUUCGAAACAGCGGCAGCCGCAGGAGCAAAAA------
.((------(((......((((((((.(((((((((((((...(((((....)))))...))))))..)))...)))).))))))))))))).....------ ( -36.40)
>DroEre_CAF1 134047 97 - 1
GGCUGAUGCUCCCACACAUGUGGCUGAUGCUUUGGGCCAUCAUUGUUGACAACAAUAUCAGUGGCUUUCGAAACAGCGGCAGCCGCAGGAGCAAAAA------
......((((((......((((((((.(((((((((((((...(((((....)))))...))))))..)))...)))).))))))))))))))....------ ( -37.40)
>DroYak_CAF1 128152 91 - 1
GGC------UUCCACACAUGUGGCUGAUGCUUUGGGCCAUCAUUGUUGACAACAAUAUCAGUGGCUUUCGAAACAGCGGCAGCCGCAGGAGCAAAAA------
.((------(((......((((((((.(((((((((((((...(((((....)))))...))))))..)))...)))).))))))))))))).....------ ( -33.50)
>DroAna_CAF1 134434 97 - 1
GGC------CGCAACCCAUGUGGCUGAUGCUUUGGGCCAUCAUUGUUGACAACAAUAUCAGUGUUUGUGACAACAGUCACAGCAACAAAAACAAUAGUUCCAC
(((------((((.....)))))))(((((.....).)))).((((((.(((((.......))))((((((....)))))))))))))............... ( -25.40)
>consensus
GGC______UCCCACACAUGUGGCUGAUGCUUUGGGCCAUCAUUGUUGACAACAAUAUCAGUGGCUUUCGAAACAGCGGCAGCCGCAGGAGCAAAAA______
..................((((((((.((((..(((((((...(((((....)))))...))))))).......)))).))))))))................ (-24.48 = -24.98 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:36 2006