Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 416,206 – 416,326 |
Length | 120 |
Max. P | 0.732912 |
Location | 416,206 – 416,326 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.50 |
Mean single sequence MFE | -26.77 |
Consensus MFE | -25.61 |
Energy contribution | -25.50 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.07 |
Mean z-score | -1.62 |
Structure conservation index | 0.96 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.732912 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 416206 120 + 27905053 UGACGAAUAAAUGAUUUAUGUAAAUUUCAUAGCAAUGCACCUUGCCAGCCAUUAUGGUGAUGACAUUGUUAAAUGAUUGAACACAUUUUUUGUGGUGCGGCGCACAUUUAUAAAGAAUUA ......(((((((...((((.......))))((..(((((((..(((.......)))..)..(((.....(((((........)))))..)))))))))..)).)))))))......... ( -25.10) >DroSec_CAF1 81895 119 + 1 UGAUGAGUAAAUGAUUUAUGUAAAUUUCAUAGCAAUGCACCUCGCCAGCCAUUAAGGUGAUGACAUUGUUAAAUGAUUGAACAAAUUUUAAAUGGUGCGGCGCACAUUUAUACAUAAU-A ..(((.(((((((...((((.......))))((..(((((((((((.........)))))...((((....))))..................))))))..)).))))))).)))...-. ( -27.60) >DroSim_CAF1 87574 120 + 1 CGACGAGUAAAUGAUUUAUGUAAAUUUCAUAGCAAUGCACCUCGCCAGCCAUAAUGGUGAUGACAUUGUUAAAUGAUUGAACAAAUUUUAAAUGGUGCGGCGCACAUUUAUAUAUAAUUA ......(((((((...((((.......))))((..((((((((((((.......))))))...((((....))))..................))))))..)).)))))))......... ( -27.60) >consensus UGACGAGUAAAUGAUUUAUGUAAAUUUCAUAGCAAUGCACCUCGCCAGCCAUUAUGGUGAUGACAUUGUUAAAUGAUUGAACAAAUUUUAAAUGGUGCGGCGCACAUUUAUAAAUAAUUA ......(((((((...((((.......))))((..((((((((((((.......))))))...((((....))))..................))))))..)).)))))))......... (-25.61 = -25.50 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:05 2006