Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 17,356,891 – 17,356,983 |
Length | 92 |
Max. P | 0.823213 |
Location | 17,356,891 – 17,356,983 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 79.18 |
Mean single sequence MFE | -31.25 |
Consensus MFE | -17.82 |
Energy contribution | -18.12 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.10 |
Mean z-score | -2.02 |
Structure conservation index | 0.57 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.792277 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17356891 92 + 27905053 GGGGGCUGGG-------CGGG--GC---GUGGCCUGUGGCCAUAGCUAUAGCACCACACGCCAAACAAUCGGAAACCGAAUGUCAUCUUCAAUUUCAAAUUCAA ((.(..((((-------(..(--((---((((((...)))))).)))...)).)))..).))..(((.((((...)))).)))..................... ( -29.20) >DroPse_CAF1 11032 99 + 1 GGGGGAUGACCAGGAGGCGUG--GCCCAUUGGCCUGUGGCUGCUGC---UGCACCACACGCCAAACAAUCGGAAACCGAAUGUCAUCUUCAAUUUCAAAUUCAA .(((((((((.....((((((--(((....)))).((((.(((...---.))))))))))))......((((...))))..))))))))).............. ( -40.30) >DroGri_CAF1 9749 95 + 1 UGACACGAAU-CGGAGACUUG--GCCCAUUGGCCGGUGGCUA------UUGCACCACACGCCAAACAAUCGGAAACCGAAUGUCAUCUUCAAUUUCAAAUUCAA ......((((-..((((.(((--(....(((((..((((...------.....))))..)))))(((.((((...)))).))).....))))))))..)))).. ( -24.30) >DroSim_CAF1 14661 92 + 1 GGGGGCGGGG-------CGGG--GC---GUGGCCUGUGGCCAUAGCUAUAGCACCACACGCCAAACAAUCGGAAACCGAAUGUCAUCUUCAAUUUCAAAUUCAA ...(((((((-------(..(--((---((((((...)))))).)))...)).))...))))..(((.((((...)))).)))..................... ( -28.80) >DroAna_CAF1 2898 88 + 1 GGAGGCGUGG-------CCUGCCGA---GUGGCCUGCGGCCGA------UGAACCACACGCCAAACAAUCGGAAACCGAAUGUCAUCUUCAAUUUCAAAUUCAA ((((((((((-------(..(((..---..)))..))((....------....)).))))))..(((.((((...)))).)))................))).. ( -24.60) >DroPer_CAF1 3823 99 + 1 GGGGGAUGACCAGGAGGCGUG--GCCCAUUGGCCUGUGGCUGCUGC---UGCACCACACGCCAAACAAUCGGAAACCGAAUGUCAUCUUCAAUUUCAAAUUCAA .(((((((((.....((((((--(((....)))).((((.(((...---.))))))))))))......((((...))))..))))))))).............. ( -40.30) >consensus GGGGGCGGAG_______CGUG__GC___GUGGCCUGUGGCCAC_GC___UGCACCACACGCCAAACAAUCGGAAACCGAAUGUCAUCUUCAAUUUCAAAUUCAA (((((........................((((.(((((..............))))).)))).(((.((((...)))).)))..))))).............. (-17.82 = -18.12 + 0.31)
Location | 17,356,891 – 17,356,983 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 79.18 |
Mean single sequence MFE | -31.58 |
Consensus MFE | -24.25 |
Energy contribution | -24.28 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.04 |
Mean z-score | -1.44 |
Structure conservation index | 0.77 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.823213 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17356891 92 - 27905053 UUGAAUUUGAAAUUGAAGAUGACAUUCGGUUUCCGAUUGUUUGGCGUGUGGUGCUAUAGCUAUGGCCACAGGCCAC---GC--CCCG-------CCCAGCCCCC ...((((.(((((((((.......))))))))).))))(((.((((.(.(((((....))..(((((...))))).---))--))))-------)).))).... ( -28.80) >DroPse_CAF1 11032 99 - 1 UUGAAUUUGAAAUUGAAGAUGACAUUCGGUUUCCGAUUGUUUGGCGUGUGGUGCA---GCAGCAGCCACAGGCCAAUGGGC--CACGCCUCCUGGUCAUCCCCC .................((((((..((((...))))......((((((((((((.---...))).)))).((((....)))--)))))).....)))))).... ( -36.20) >DroGri_CAF1 9749 95 - 1 UUGAAUUUGAAAUUGAAGAUGACAUUCGGUUUCCGAUUGUUUGGCGUGUGGUGCAA------UAGCCACCGGCCAAUGGGC--CAAGUCUCCG-AUUCGUGUCA .(((...((((.(((.((((((((.((((...)))).))))....(.(((((....------..))))))((((....)))--)..)))).))-)))))..))) ( -28.70) >DroSim_CAF1 14661 92 - 1 UUGAAUUUGAAAUUGAAGAUGACAUUCGGUUUCCGAUUGUUUGGCGUGUGGUGCUAUAGCUAUGGCCACAGGCCAC---GC--CCCG-------CCCCGCCCCC ...((((.(((((((((.......))))))))).))))((.((((.((((((((....))....)))))).)))).---))--....-------.......... ( -27.80) >DroAna_CAF1 2898 88 - 1 UUGAAUUUGAAAUUGAAGAUGACAUUCGGUUUCCGAUUGUUUGGCGUGUGGUUCA------UCGGCCGCAGGCCAC---UCGGCAGG-------CCACGCCUCC ...((((.(((((((((.......))))))))).))))(..((((.((((((...------...)))))).)))).---.)((.(((-------(...)))))) ( -31.80) >DroPer_CAF1 3823 99 - 1 UUGAAUUUGAAAUUGAAGAUGACAUUCGGUUUCCGAUUGUUUGGCGUGUGGUGCA---GCAGCAGCCACAGGCCAAUGGGC--CACGCCUCCUGGUCAUCCCCC .................((((((..((((...))))......((((((((((((.---...))).)))).((((....)))--)))))).....)))))).... ( -36.20) >consensus UUGAAUUUGAAAUUGAAGAUGACAUUCGGUUUCCGAUUGUUUGGCGUGUGGUGCA___GC_ACAGCCACAGGCCAA___GC__CACG_______CCCAGCCCCC ...((((.(((((((((.......))))))))).))))...((((.((((((............)))))).))))............................. (-24.25 = -24.28 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:27 2006