Locus 6594

Sequence ID 3R_DroMel_CAF1
Location 17,355,061 – 17,355,180
Length 119
Max. P 0.951316
window10737

overview

Window 7

Location 17,355,061 – 17,355,180
Length 119
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 97.11
Mean single sequence MFE -21.98
Consensus MFE -20.77
Energy contribution -20.94
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.30
Structure conservation index 0.94
SVM decision value 1.41
SVM RNA-class probability 0.951316
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17355061 119 - 27905053
UGUGCUUAAGAAGGCGUGUAAUUGAAACAUUCAAAAGACAAUUUCCAAGUCUUAGCACAGACACACUUAAUGGACGCAAAAGACAUGGACAAAGUUAAGAAGUGA-AUGCGAAAGAAAAA
((((((.((((.((..(((..((((.....))))...)))....))...))))))))))....(((((....(((..................)))...))))).-...(....)..... ( -21.77)
>DroVir_CAF1 15080 120 - 1
UGUGCUUAAGAAGGCGUGUAAUUGAAACAUUCAAAAGACAAUUUCCAAGUCUUAGCACAGACACACUUAAUGGACGCAAAAGACAUGGACAAAGUUAGGAAGUGAAAUGCGAAAGAGAAA
((((((.((((.((..(((..((((.....))))...)))....))...))))))))))....(((((....(((..................)))...))))).....(....)..... ( -21.77)
>DroGri_CAF1 8511 120 - 1
UGUGCUUAAGAAGGCGUGUAAUUGAAACAUUCAAAAGACAAUUUCCAAGUCUUAGCACAGACACAGUUAAUGGACGCAAAAGACAUGGACAAAGUUAAGAAGUGAAAUGCGAAAGAAAAA
((((((.((((.((..(((..((((.....))))...)))....))...))))))))))(((...(((.(((...........))).)))...))).............(....)..... ( -19.00)
>DroEre_CAF1 6507 119 - 1
UGUGCUUAAGAAGGCGUGUAAUUGAAACAUUCAAAAGACAAUUUCCAAGUCUUAGCACAGACACACUUAAUGGACGCAAGAGACAUGGACAAAGUUAAGAAGUGA-AUGCGAAAGAAAAA
((((((.((((.((..(((..((((.....))))...)))....))...))))))))))....(((((....(((..................)))...))))).-...(....)..... ( -21.77)
>DroWil_CAF1 1884 120 - 1
UGUGCUUAAGAAGGCGUGUAAUUGAAACAUUCAAAAGACAAUUUCCAAGUCUUAGCACAGACACACUUAAUGGACAUAACAGACAUGGACAAAGUUAAGAAGUGAAAUGCGAAAGAAAAA
((((((.((((.((..(((..((((.....))))...)))....))...))))))))))..(((.(((((((..(((.......)))..))...)))))..))).....(....)..... ( -23.10)
>DroMoj_CAF1 7484 120 - 1
UGUGCUUAAGAAGGCGUGUAAUUGAAACAUUCAAAAGACAAUUUCCAAGUCUUAGCACAGACACACUUAAUGGACGCCGAAGACAUGGACAAAGUUAAGAAGUGAAAUGCGAAAGAAAAA
((((((.((((.((..(((..((((.....))))...)))....))...))))))))))..(((.((((((.....(((......))).....))))))..))).....(....)..... ( -24.50)
>consensus
UGUGCUUAAGAAGGCGUGUAAUUGAAACAUUCAAAAGACAAUUUCCAAGUCUUAGCACAGACACACUUAAUGGACGCAAAAGACAUGGACAAAGUUAAGAAGUGAAAUGCGAAAGAAAAA
((((((.((((.((..(((..((((.....))))...)))....))...))))))))))....(((((....(((..................)))...))))).....(....)..... (-20.77 = -20.94 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:25 2006