Locus 6591

Sequence ID 3R_DroMel_CAF1
Location 17,345,320 – 17,345,475
Length 155
Max. P 0.737834
window10729 window10730

overview

Window 9

Location 17,345,320 – 17,345,435
Length 115
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 92.13
Mean single sequence MFE -29.79
Consensus MFE -25.79
Energy contribution -26.02
Covariance contribution 0.23
Combinations/Pair 1.08
Mean z-score -2.11
Structure conservation index 0.87
SVM decision value 0.44
SVM RNA-class probability 0.737834
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17345320 115 + 27905053
UACCAAAUCGAUU-UUCAC----CAUCCCCAAACUGGGGGCUUCAACCCGUUUUAACGGCUGCCAUAAUCGCACCCAGCCGCAAACUGACGGGAAAAAGUUGAUUGAUGAUAAUGACCCA
.....((((((((-((...----..(((((.....)))))......((((((....((((((.............))))))......))))))..))))))))))............... ( -32.42)
>DroSim_CAF1 3334 116 + 1
UUCCAAAUCGAUUUUUCAC----CAUCCCCAAACUGUGGGCUUCAACCCGUUUUAACUGCUGCCAUAAUCGCACCCAGCCGCAGACUGACGGGAAAACAUUGAUUGAUGAUAAUGACCCA
.((..((((((((((((..----....((((.....)))).......(((((....((((.((..............)).))))...)))))))))).)))))))...)).......... ( -25.24)
>DroYak_CAF1 4163 120 + 1
UUCCAAAUCGAUUUUUCACUCCCAAUCCCCAAACUGGGGACUUCAACCCGUUUUAACGGCUGCCAUAAUCGCACCCAGCCGCAGACUGACGGGAAAGCAUUGAUUGAUGAUAAUGACCCA
.((..((((((((((((........(((((.....))))).......(((((....((((((.............))))))......)))))))))).)))))))...)).......... ( -31.72)
>consensus
UUCCAAAUCGAUUUUUCAC____CAUCCCCAAACUGGGGGCUUCAACCCGUUUUAACGGCUGCCAUAAUCGCACCCAGCCGCAGACUGACGGGAAAACAUUGAUUGAUGAUAAUGACCCA
.....(((((((.............(((((.....)))))......((((((....((((((.............))))))......)))))).....)))))))............... (-25.79 = -26.02 +   0.23)

alignment

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secondary structure

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dotplot

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Window 0

Location 17,345,355 – 17,345,475
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 92.22
Mean single sequence MFE -28.93
Consensus MFE -24.55
Energy contribution -26.55
Covariance contribution 2.00
Combinations/Pair 1.00
Mean z-score -2.17
Structure conservation index 0.85
SVM decision value 0.39
SVM RNA-class probability 0.715015
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17345355 120 + 27905053
CUUCAACCCGUUUUAACGGCUGCCAUAAUCGCACCCAGCCGCAAACUGACGGGAAAAAGUUGAUUGAUGAUAAUGACCCAAAUUCGUAAAUAAACGAUAGCAUCGUUAUUAUCAUUGCAU
......((((((....((((((.............))))))......)))))).....((....((((((((((((.......((((......)))).....))))))))))))..)).. ( -33.32)
>DroSim_CAF1 3370 120 + 1
CUUCAACCCGUUUUAACUGCUGCCAUAAUCGCACCCAGCCGCAGACUGACGGGAAAACAUUGAUUGAUGAUAAUGACCCAAAUUCGUAAAUAAACGAUAGAAUCGCUUUUAUCAUUGCUU
......((((((....((((.((..............)).))))...))))))............((((((((..........((((......))))...........)))))))).... ( -25.04)
>DroYak_CAF1 4203 117 + 1
CUUCAACCCGUUUUAACGGCUGCCAUAAUCGCACCCAGCCGCAGACUGACGGGAAAGCAUUGAUUGAUGAUAAUGACCCAAAUUCGUAAAUAAACGAUAGCAUCGUUAUU---AUAGCUA
......((((((....((((((.............))))))......))))))..(((........((((((((((.......((((......)))).....))))))))---)).))). ( -28.42)
>consensus
CUUCAACCCGUUUUAACGGCUGCCAUAAUCGCACCCAGCCGCAGACUGACGGGAAAACAUUGAUUGAUGAUAAUGACCCAAAUUCGUAAAUAAACGAUAGCAUCGUUAUUAUCAUUGCUU
......((((((....((((((.............))))))......))))))...........((((((((((((.......((((......)))).....))))))))))))...... (-24.55 = -26.55 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:19 2006