| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,344,332 – 17,344,429 |
| Length | 97 |
| Max. P | 0.891373 |
| Location | 17,344,332 – 17,344,429 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.67 |
| Mean single sequence MFE | -36.90 |
| Consensus MFE | -21.76 |
| Energy contribution | -21.77 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.891373 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17344332 97 - 27905053 AAGUGUCCACUCCCACUG------------GGAGUGGGCGAAGUGGGCGGAUUGGG-----------CAGAUUGACGUCCUUGUAAUUGCAUUAAAAUGCAAUUCGAAUUGCCGGUCGAC ...(((((((((((...)------------))))))))))...(((.(((...(((-----------(........))))(((.((((((((....)))))))))))....))).))).. ( -38.10) >DroSim_CAF1 2363 97 - 1 AAGUGGCCACACCCACUG------------GGAGUGGGCGCAGUGGGCGGAUUGGG-----------CAGAUUGACGUCCUUGUAAUUGCAUUAAAAUGCAAUUCGAAUUGCCGGUCGAC ...(((((.(.(((((((------------.(......).))))))).).....((-----------(((.((((((....)))((((((((....))))))))))).)))))))))).. ( -36.00) >DroYak_CAF1 3676 117 - 1 AAGUGUGGU---GGAUUGGGCGGGUUGUGCGGAGUGGGUAGAGUGGGCGGUUCGGGGUGGAAGCGCACUGACUGACGUCCUUGUAAUUGCAUUAAAAUGCAAUUCGAAUUGCCGGUCGAC .......((---.(((((((((.....)))(((((.(((..((((.((..(((.....))).)).)))).))).)).)))(((.((((((((....)))))))))))....)))))).)) ( -36.60) >consensus AAGUGUCCAC_CCCACUG____________GGAGUGGGCGAAGUGGGCGGAUUGGG___________CAGAUUGACGUCCUUGUAAUUGCAUUAAAAUGCAAUUCGAAUUGCCGGUCGAC .(((((......)))))..............((.(.(((((...(((((..........................)))))(((.((((((((....))))))))))).))))).)))... (-21.76 = -21.77 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:17 2006