Locus 6589

Sequence ID 3R_DroMel_CAF1
Location 17,341,025 – 17,341,139
Length 114
Max. P 0.904079
window10727

overview

Window 7

Location 17,341,025 – 17,341,139
Length 114
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 82.55
Mean single sequence MFE -29.97
Consensus MFE -23.66
Energy contribution -23.77
Covariance contribution 0.11
Combinations/Pair 1.08
Mean z-score -2.54
Structure conservation index 0.79
SVM decision value 1.03
SVM RNA-class probability 0.904079
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17341025 114 + 27905053
--GGACCCACAACUAACAGCGCUCUAAUGGCCGCACCGCUCGUUUGUGCUGAAAACUAAUGAUUAAACUUGUCAUUAGCUUGUCCGCUCGCUCACAUGACGCGGUCCACUAUUUGU
--(((((.((((....((((((...((((((......)).)))).))))))....((((((((.......)))))))).))))......((((....)).)))))))......... ( -32.60)
>DroSec_CAF1 16959 114 + 1
--GGACCCACAACUAACAGCACUCUAAUGGCCGCCCCGCUCGUUUGUGCUGAAAACUAAUGAUUAAACUUGUCAUUAGCUUGUCCGCUCGCUCACAUGACGCGGUCCGCUAUUUGU
--(((((.((((....((((((...((((((......)).)))).))))))....((((((((.......)))))))).))))......((((....)).)))))))......... ( -33.00)
>DroSim_CAF1 22560 114 + 1
--GGACCCACAACUAACAGCACUCUAAUGGCCGCCCCGCUCGUUUGUGCUGAAAACUAAUGAUUAAACUUGUCAUUAGCUUGUCCGCUCGCUCACAUGACGCGGUCCGCUAUUUGU
--(((((.((((....((((((...((((((......)).)))).))))))....((((((((.......)))))))).))))......((((....)).)))))))......... ( -33.00)
>DroEre_CAF1 22270 109 + 1
--GAACCCACAACUAACAGCACUCUAAUGGCCGU-CCGCUCAUUUGUGCUGAAAACUAAUGAUUAAACUUGUCAUUAGCUUGUCCGC----UCACAUGCCGCGGCCCGCUAUUUGU
--..................((...((((((.(.-((((.(((.((.((.((...((((((((.......))))))))....)).))----.)).)))..)))).).)))))).)) ( -27.80)
>DroYak_CAF1 20879 92 + 1
--GGACCCACAACUAACAGCACUCUAAUGGCCGCCCCGCUCAUUUGUGCUGAAAACUAAUGAUUAAACUUGUCAUUAGACUGUCC----------------------GCUAUUUGU
--((((..........((((((...((((((......)).)))).))))))....((((((((.......))))))))...))))----------------------......... ( -27.60)
>DroAna_CAF1 22828 104 + 1
AACGACCCUCACCUAACAGCACCCUAAUGGCAGCUAGCCUCAUUUGUGCUGAAAACUAAUGAUUAAACUUGUCAUUAGCCUGUCCGUUA----A--------AGUAGACAAUUCGU
.((((...........((((((......(((.....)))......))))))....((((((((.......))))))))..((((..(..----.--------.)..))))..)))) ( -25.80)
>consensus
__GGACCCACAACUAACAGCACUCUAAUGGCCGCCCCGCUCAUUUGUGCUGAAAACUAAUGAUUAAACUUGUCAUUAGCUUGUCCGCUC__UCACAUGACGCGGUCCGCUAUUUGU
..((((..........((((((...((((((......)).)))).))))))....((((((((.......))))))))...))))............................... (-23.66 = -23.77 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:16 2006