| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,335,032 – 17,335,133 |
| Length | 101 |
| Max. P | 0.816339 |
| Location | 17,335,032 – 17,335,133 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 83.32 |
| Mean single sequence MFE | -20.25 |
| Consensus MFE | -14.50 |
| Energy contribution | -15.54 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.816339 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17335032 101 + 27905053 CCGUCACUGUCUGACAAUGUGUUUAGCAAAAAGGCAAGAAAAAAAGACGAGGAGCAAUCUGCCAAAGCAGAUACAUACACAACGCAGAUACAGAUACAAAU ..(((..((((((....(((((...((......)).....................((((((....))))))....)))))...))))))..)))...... ( -20.80) >DroSec_CAF1 10959 88 + 1 CCGUCACUGUCUGACAAUGUGUUUAGCAAAAAGGCAAGAAA-AAAGAAGAGGACCAAUCUGCCAAAGC------------AACGCAGAUACAGAUACAAAU .......((((((....((((((..((.....((((.((..-...............))))))...))------------))))))....))))))..... ( -15.83) >DroSim_CAF1 16572 100 + 1 CCGUCACUGUCUGACAAUGUGUUUAGCAAAACGGCAAGAAA-AAAGACGAGGAGCAAUCUGCCAAAGCAGAUACAUACACAACGCAGAUACAGAUACAAAU ..(((..((((((....(((((...((......))......-..............((((((....))))))....)))))...))))))..)))...... ( -20.80) >DroEre_CAF1 16163 81 + 1 CCGUCAGUGUCUGACAAUGUGUUUAGCAAAAAGGCAAGAAA-AAAGACGAGGAGCAG-------------CUACA-ACACAACGCAGAUACAGAUA----- ..(((.(((((((....((((((((((......((......-...........)).)-------------))).)-)))))...))))))).))).----- ( -19.73) >DroYak_CAF1 14577 100 + 1 CCGUCACUGUCUGACAAUGUGUUUAGCAAGAAGGCAAGAAA-AAAGACGAGAGGCAGUCUGCCAAAGCAGAUUCAGACACAACGCAGAUACAGAUACAGAU ..(((..((((((....(((((((.((......))......-...........(.(((((((....)))))))))))))))...))))))..)))...... ( -24.10) >consensus CCGUCACUGUCUGACAAUGUGUUUAGCAAAAAGGCAAGAAA_AAAGACGAGGAGCAAUCUGCCAAAGCAGAUACA_ACACAACGCAGAUACAGAUACAAAU .......((((((....((((((..((......)).....................((((((....))))))........))))))....))))))..... (-14.50 = -15.54 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:13 2006