| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,334,778 – 17,334,872 |
| Length | 94 |
| Max. P | 0.658170 |
| Location | 17,334,778 – 17,334,872 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.41 |
| Mean single sequence MFE | -26.27 |
| Consensus MFE | -15.16 |
| Energy contribution | -15.22 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.658170 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17334778 94 - 27905053 AAUUGGGCAAGAGACAAC------AGUUUCGCAAUC------UUUAUUUGCUGUCUAAUGGGCAA--------------CUGGCACAUAGCACAUACGCCACGUUGGACAGGGCUAAUUA ((((((.(..(((((...------.)))))......------........(((((((((((((..--------------.((((.....)).))...))).))))))))))).)))))). ( -31.20) >DroSec_CAF1 10705 94 - 1 AAUUGGGCAAGAGACAAC------AGCUUCGCUAUC------UUUAUUCGCUGUCUAAUGGGCAA--------------CUGGCACAUAGCACAUACGCCACGUUGGACAGGGCUAAUUA ((((((.(.(((((....------(((...))).))------))).....(((((((((((((..--------------.((((.....)).))...))).))))))))))).)))))). ( -28.90) >DroSim_CAF1 16313 94 - 1 AAUUGGGCAAGAGACAAC------AGCUUCGCAAUC------UUUAUUCGCUGUCUAAUGGGCAA--------------CUGGCACAUAGCACAUACGCCACGUUGGACAGGGCUAAUUA ((((((.(.(((((...(------......)...))------))).....(((((((((((((..--------------.((((.....)).))...))).))))))))))).)))))). ( -27.20) >DroEre_CAF1 15911 93 - 1 AAUUCGGCAAGAGACAACGUCAACAUAUUCGCAAUC------UUUAUUCGCUGUCUAAUGGGC---------------------ACAUAGCACAUACGCCACGUUGGACAGGGCUAAUUA .....(((.(((((...((..........))...))------))).....(((((((((((((---------------------.............))).)))))))))).)))..... ( -22.72) >DroYak_CAF1 14308 108 - 1 AAUUUGGCAAGAGACAAC------AACUUCGCAAUC------UUUAUUCGUUGUCUAAUGGGCACACGGCACAUAGCACAUGGCACAUAGCACAUACGCCACGUUGGACAGGGCUAAUUA ...(((((.(((((...(------......)...))------))).....(((((((((((((.....((.....))..(((((.....)).)))..))).)))))))))).)))))... ( -26.80) >DroAna_CAF1 14735 90 - 1 AAUUGGCAAAGCAACGAC------U-UUAUGCAAUCGCUUCGUACAUAAGUUGCUUAAUGGGC-----------------------AUCGCACAUACGCCAUGUUGGACAGGGCUAAUUA (((((((.(((((((...------.-....((....))...........)))))))..(.(((-----------------------((.((......)).))))).).....))))))). ( -20.81) >consensus AAUUGGGCAAGAGACAAC______AGCUUCGCAAUC______UUUAUUCGCUGUCUAAUGGGCAA______________CUGGCACAUAGCACAUACGCCACGUUGGACAGGGCUAAUUA ((((((.(..(((..............)))....................(((((((((((((..................................))).))))))))))).)))))). (-15.16 = -15.22 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:12 2006