Locus 6585

Sequence ID 3R_DroMel_CAF1
Location 17,334,603 – 17,334,706
Length 103
Max. P 0.762713
window10722

overview

Window 2

Location 17,334,603 – 17,334,706
Length 103
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 76.46
Mean single sequence MFE -35.60
Consensus MFE -19.87
Energy contribution -19.98
Covariance contribution 0.11
Combinations/Pair 1.06
Mean z-score -1.76
Structure conservation index 0.56
SVM decision value 0.51
SVM RNA-class probability 0.762713
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17334603 103 + 27905053
AGCGUCACCGGCA------------ACCGC-CUCGGCCACGGCUCGUUUGCGGUUAAGUGAAAUGGCAAUGGCACAUUAUAG--UU--GCCAUGAUUACGAGGCGGCACUACUCGUAAAU
((.(((.((...(------------(((((-..((((....)).))...))))))..((((.((((((((...........)--))--)))))..))))..)).))).)).......... ( -33.80)
>DroPse_CAF1 18075 118 + 1
AACUGCCUCGGCCGGGCUCACCCAGGCCGCUCGCUGCCACGGCUCGUUUGUGGUUAAGUGAAAUGGCAAUGGCACAUUAUACAAGC--GCCAUGAUUACGACUCAGCAUAACUCGUAAAU
...((((.((((((((....))).))))).((((((((((((.....)))))))..)))))...))))(((((.(.........).--)))))..((((((...........)))))).. ( -40.30)
>DroEre_CAF1 15730 109 + 1
AGCGGCAGCGGCAACGGCA------ACGGC-AACGGCCACGGCUCGUUUGCGGUUAAGUGAAAUGGCAAUGGCACAUUAUAG--UU--GCCAUGAUUACGAGGCGGCACUACUCGUAAAU
.((....))((((((....------.((..-..))((((..(((..((..(......)..))..)))..))))........)--))--)))....(((((((.........))))))).. ( -39.10)
>DroYak_CAF1 14139 97 + 1
AGCGACAGCGGCA-------------------ACGGCCACGGCUCGUUUGCGGUUAAGUGAAAUGGCAAUGGCACAUUAUAG--UU--GCCAUGAUUACGAGGCGGCACUACUCGUAAAU
.((....))((((-------------------((.((((..(((..((..(......)..))..)))..))))........)--))--)))....(((((((.........))))))).. ( -33.40)
>DroAna_CAF1 14570 93 + 1
------------A------------ACUGC-CUCGGCCACGGCUCGUUUGCGGUUAAGUGAAAUGGCAAUGGCACAUUAUAG--CAGCGCCAUGAUUACGAGUUAGCAUAACUCGUAAAU
------------(------------(((((-..((((....)).))...)))))).......(((((....((........)--)...)))))..((((((((((...)))))))))).. ( -29.40)
>DroPer_CAF1 19093 118 + 1
AACUGCCUCGGCCCGGCUCACCCAGGCCGCUCGCUGCCACGGCUCGUUUGUGGUUAAGUGAAAUGGCAAUGGCACAUUAUACAAGC--GCCAUGAUUACGACUCAGCAUAACUCGUAAAU
...((((.(((((.((.....)).))))).((((((((((((.....)))))))..)))))...))))(((((.(.........).--)))))..((((((...........)))))).. ( -37.60)
>consensus
AGCGGCAGCGGCA____________ACCGC_CACGGCCACGGCUCGUUUGCGGUUAAGUGAAAUGGCAAUGGCACAUUAUAG__UU__GCCAUGAUUACGAGGCAGCACAACUCGUAAAU
...................................((((..(((..((..(......)..))..)))..))))......................(((((((.........))))))).. (-19.87 = -19.98 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:11 2006