| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,330,555 – 17,330,656 |
| Length | 101 |
| Max. P | 0.697577 |
| Location | 17,330,555 – 17,330,656 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.62 |
| Mean single sequence MFE | -26.98 |
| Consensus MFE | -17.34 |
| Energy contribution | -16.73 |
| Covariance contribution | -0.61 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.697577 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17330555 101 + 27905053 AGUCCCAGCCACAGGCCGUCAUCAAUAAUGCAUGCUAAAAGCUUUUUGCAUUAUUUUAGGUAUUUCUGGUGAGACUUCUCGGCCGCAGCCACACA--CU--CACC--------------- ((((...((((...(((......(((((((((.((.....))....)))))))))...))).....))))..))))....(((....))).....--..--....--------------- ( -24.90) >DroPse_CAF1 14392 118 + 1 CCGUUCUGCCACAGGCCGGCAUCAAUAAUGCAUGCUAAAAGCUUUUUGCAUUAUUUUACGUAUUUCUGCCAAGGCGCCCCGUCCUGGCCCACACACACA--CACAGAACACAGGAUACGG ((((...(((...))).(((...(((((((((.((.....))....)))))))))............((....)))))..((((((.............--.........)))))))))) ( -28.65) >DroSec_CAF1 6627 101 + 1 AAGCCCAGCCACAGGCCGUCAUCAAUAAUGCAUGCUAAAAGCUUUUUGCAUUAUUUUAGGUAUUUCUGGUGAGACUUCUCGGCCGCAGCCACACA--CU--CACC--------------- ..(((..(((...))).......(((((((((.((.....))....)))))))))...)))......((((((.......(((....))).....--))--))))--------------- ( -24.90) >DroYak_CAF1 10274 101 + 1 AAGACGAGCCACAGGCCGCCAUCAAUAAUGCAUGCUAAAAGCUUUUUGCAUUAUUUUAGGUAUUUCUGGUGAGACUUCUCGGCCGCAUCCACACA--CU--CACC--------------- ..(.((.(((.((((..(((...(((((((((.((.....))....)))))))))...)))...))))..(((....))))))))).........--..--....--------------- ( -26.90) >DroAna_CAF1 11162 102 + 1 AGGCCGAGCCACAGGCCGCCAUCAAUAAUGCAUGCUAAAAGCUUUUUGC-UUAUUUUACGUAUUUCUGGCGAGGCGUCUUGGCCACAACCACACA--CGCACACC--------------- .(((((((..((.(.((((((.....(((((.((..(.((((.....))-)).)..)).)))))..))))).).))))))))))...........--........--------------- ( -27.50) >DroPer_CAF1 15394 116 + 1 CCGUUCUGCCACAGGCCGGCAUCAAUAAUGCAUGCUAAAAGCUUUUUGCAUUAUUUUACGUAUUUCUGCCAAGGCGCCCCGUCCUGGCCCACACA--CA--CACAGAACACAGGAUACGG ..((((((.....((((((((..(((((((((.((.....))....)))))))))....(.....))))).(((((...)).)))))))......--..--..))))))........... ( -29.06) >consensus AAGCCCAGCCACAGGCCGCCAUCAAUAAUGCAUGCUAAAAGCUUUUUGCAUUAUUUUACGUAUUUCUGGCGAGACGUCUCGGCCGCACCCACACA__CU__CACC_______________ .............(((((.....(((((((((.((.....))....)))))))))...(((.((......)).)))...))))).................................... (-17.34 = -16.73 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:02 2006