Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,425,082 – 2,425,172 |
Length | 90 |
Max. P | 0.829115 |
Location | 2,425,082 – 2,425,172 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 76.53 |
Mean single sequence MFE | -40.68 |
Consensus MFE | -22.48 |
Energy contribution | -25.16 |
Covariance contribution | 2.68 |
Combinations/Pair | 1.11 |
Mean z-score | -1.93 |
Structure conservation index | 0.55 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.829115 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2425082 90 + 27905053 GAAGCAGGA-------GCCCGGAGGUGGGUAAGACCACCUGGGCGGAGG-------------UC--CAUGCAGGGGGCGACAUAAAAGUUUCACACCCAGCCAUUUGGCCAU ...((((((-------.((((.((((((......))))))...))).).-------------))--).))).(((.(.(((......))).)...))).(((....)))... ( -34.60) >DroSec_CAF1 138028 103 + 1 GAAGCCGGA-------GCCCGGAGGUGGGUCACACCACCUGGGCGGAGGUCCAAGCAGGGGGUC--CAUGCAGGGGGCGACAUAAAAGUUUCGCACCCAGGCAUUUGGCCAU ...((((((-------.(((..((((((......))))))((((....))))......))).))--)((((..(((((((.((....)).)))).)))..))))..)))... ( -48.90) >DroSim_CAF1 132005 103 + 1 GAAGCCGGA-------GCCCGGAGGUGGGUCAGACCACCUGGGCGGAGGUUCAAGCAGGGGGUC--CAUGCAGGGGGCGACAUAAAAGUUUCGCACCCAGGCAUUUGGCCAU ...((((((-------.(((..((((((......))))))((((....))))......))).))--)((((..(((((((.((....)).)))).)))..))))..)))... ( -46.10) >DroEre_CAF1 133101 99 + 1 GAGCCCGGAGCACGGAGCACGGAGGAGGGCCAGACCACCUGGCAGGUGG-------------ACCUCAUGCAAGGGGCGACAUAAAAGUUUCGCACCCCGGCAUUUGGGCAU ..(((((((((.((..(((..((((...(((((.....)))))......-------------.)))).)))..(((((((.((....)).)))).))))))).))))))).. ( -41.80) >DroYak_CAF1 127238 96 + 1 GAGCAUGGAGCGCGGAGCAUGGAAUAGGGUCGAACCACCUGGCAGGAGG-------------UC--CAUGCAAGCGGCGACAUAAAAGU-UCGCACCCAGGCAUUUGGCCAU .....(((..(((...(((((((...((......)).(((......)))-------------))--)))))..)))(((((......).-))))..)))(((.....))).. ( -32.00) >consensus GAAGCCGGA_______GCCCGGAGGUGGGUCAGACCACCUGGGCGGAGG_____________UC__CAUGCAGGGGGCGACAUAAAAGUUUCGCACCCAGGCAUUUGGCCAU ...((((((.......((((..((((((......))))))))))........................(((..(((((((.((....)).)))).)))..)))))))))... (-22.48 = -25.16 + 2.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:32 2006