Locus 6578

Sequence ID 3R_DroMel_CAF1
Location 17,322,743 – 17,322,835
Length 92
Max. P 0.535967
window10705

overview

Window 5

Location 17,322,743 – 17,322,835
Length 92
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 80.74
Mean single sequence MFE -24.50
Consensus MFE -12.76
Energy contribution -12.84
Covariance contribution 0.08
Combinations/Pair 1.31
Mean z-score -1.95
Structure conservation index 0.52
SVM decision value 0.00
SVM RNA-class probability 0.535967
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17322743 92 - 27905053
GCCCCAGGAGUCGCUCCAACCGCUCCUGCCGUUCGAAAUCCUGGCAGUGCUGCCAACCUCAUUUGGUAUGCAUUUUUAUUUGGCUCAUAUAC
(((((((((.(((....(((.((....)).))))))..)))))).(((((((((((......)))))).))))).......)))........ ( -28.30)
>DroSim_CAF1 4395 92 - 1
GCCCCAGGAGUCGCUCCAACCGCUCCUGCCGUUCGAAAUCUUGGCAGUGCUGCCAACCUCAUUUGGUAUGCAUUUUUAUUUGGCUCAUAUAC
(((..((((((.(......).))))))((((..........))))(((((((((((......)))))).))))).......)))........ ( -25.90)
>DroEre_CAF1 4100 82 - 1
GCCCCAGGAGUCGCUC----------CGCCGCUCGAAAUCCUGGCAGUGCUGCCUGCCUCAUUUGGUAUGCAUUUUUAUUUGGCUCAUAUAC
(((((((((...((..----------....))......))))))......(((.((((......)))).))).........)))........ ( -21.90)
>DroYak_CAF1 2353 82 - 1
GCCCCAGGAGUCGCUC---------AUGCCCCUCGAAGUCCUGGCAGAGCUGC-UGCCUCAUUUGGUAUGCAUUUUUAUUCGGCUCAUAUAC
.......(((((((((---------.((((............))))))))(((-((((......)))).))).........)))))...... ( -25.60)
>DroAna_CAF1 4381 80 - 1
GCCUUCAGGGCAGCUC---------CUG---CUCGAAUUCCUGGCAGCUUCGCCAGCUUCAUUUCGUAUGCAUUUUUAUUUGGCUCAUAUAC
(((....((((((...---------)))---)))(((...(((((......))))).))).....................)))........ ( -20.80)
>consensus
GCCCCAGGAGUCGCUC_________CUGCCGCUCGAAAUCCUGGCAGUGCUGCCAGCCUCAUUUGGUAUGCAUUUUUAUUUGGCUCAUAUAC
.......((((((.............................((((....)))).(((......))).............))))))...... (-12.76 = -12.84 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:56 2006