Locus 6576

Sequence ID 3R_DroMel_CAF1
Location 17,313,663 – 17,313,778
Length 115
Max. P 0.837414
window10699

overview

Window 9

Location 17,313,663 – 17,313,778
Length 115
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 86.32
Mean single sequence MFE -26.87
Consensus MFE -23.39
Energy contribution -24.73
Covariance contribution 1.34
Combinations/Pair 1.09
Mean z-score -1.98
Structure conservation index 0.87
SVM decision value 0.74
SVM RNA-class probability 0.837414
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17313663 115 - 27905053
UACAAUAUAACUUAUAACUUCAAUGUAUCUUAUAACUUCA----AUAAGUUCAAACAGCAAUCUCAUA-UGCGCGCCAUCUGGCGGCCUGUGCGUUCCCACUUUACCCGUAAGGUGGUGA
.....(((((..((((.......))))..)))))......----..................(.((((-.((.((((....)))))).)))).).((((((((((....)))))))).)) ( -24.20)
>DroSec_CAF1 46230 111 - 1
U---------CUUAUAACUUCAAUGUAUCUUAUAUCUUCAAGUAAUAAGUCCCAACAGCAAUCUCAUAUUGCGCGCCAUCUGGCGGCCUGUGCGUUCCCACCUUACCCGUAAGAUGGCGA
.---------(((((.((((.((.((((...)))).)).)))).)))))........(((((.....))))).((((((((.((((...(((......))).....)))).)))))))). ( -29.40)
>DroSim_CAF1 47773 111 - 1
U---------CUUAUAACUUCAAUGUAUCUUAGAUUUUCAAGUAAUAAGUCCCAACAGCAAUCUCAUAUUGCGCGCCAUCUGGCGGCCUGUGCGUUUCUACCUUACCCGUAAGAUGGCGA
.---------(((((.((((.((...(((...))).)).)))).)))))........(((((.....))))).((((((((.((((...(((......))).....)))).)))))))). ( -27.00)
>consensus
U_________CUUAUAACUUCAAUGUAUCUUAUAUCUUCAAGUAAUAAGUCCCAACAGCAAUCUCAUAUUGCGCGCCAUCUGGCGGCCUGUGCGUUCCCACCUUACCCGUAAGAUGGCGA
..........(((((.((((.((.(((.....))).)).)))).)))))........(((((.....))))).((((((((.((((...(((......))).....)))).)))))))). (-23.39 = -24.73 +   1.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:50 2006