| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,311,667 – 17,311,784 |
| Length | 117 |
| Max. P | 0.646794 |
| Location | 17,311,667 – 17,311,784 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.62 |
| Mean single sequence MFE | -31.37 |
| Consensus MFE | -17.82 |
| Energy contribution | -18.38 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.646794 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17311667 117 + 27905053 GGACGAGGACUUGAAAGAAUUUCUAGAGCCGAUGGUGGAGGAAGUGGAGUUGAUGAGCCAAAAAAAGGCGAAUGACUUCAAGGAUU---UUCUCGAGCCAAUGCCAGAGGAGUUAGAGCU ......((.(((.....(((((((...((...((((.((((((((((((((.((..(((.......)))..)))))))))....))---)))))..))))..))...))))))).))))) ( -29.90) >DroSec_CAF1 44263 117 + 1 GGCCGAGGACUUGAAAGAAUUUCUAGAGCCGAUGGUGGAGGAAGUGGAGUUGAUGAGCCAACAAAAGGCGAAUGACUUCAAGGACU---UUCUCGAGCCAAUGGCAGAGGAGUUAGAGCU ......((.(((.....(((((((...((((.((((.((((((((((((((.((..(((.......)))..))))))))....)))---)))))..)))).))))..))))))).))))) ( -37.70) >DroSim_CAF1 45980 117 + 1 GGCCGAGGACUUGAAAGAAUUUCUAGAGCCGAUGGUGGAGGAAGUGGAGUUGAUGAGCCAACAAAAGGCGAAUGACUUCAAGGACU---UUCUCGAGCCAAUGGCAGAGGAGUUAGAGCU ......((.(((.....(((((((...((((.((((.((((((((((((((.((..(((.......)))..))))))))....)))---)))))..)))).))))..))))))).))))) ( -37.70) >DroEre_CAF1 46171 117 + 1 GGCCGAAGACUUGAAAGAAUUUCUAGAGCCGAUGGCAGAGGAAGUGGAGUUGAUAAGUCAACAAAAGAAGGAUAGCUUCAAAGAUU---UUCUAGAGCCAAUGGCAGAGGAGUUAGAGCU ......((.(((.....(((((((...((((.((((..(((((((...(((((....)))))....((((.....))))....)))---))))...)))).))))..))))))).))))) ( -32.30) >DroYak_CAF1 49050 117 + 1 GGCCGAAGACUUGAAAGAAUUUUUAGAGCCGAUGGCAGAGGAAGUAGAAUUGAUAAGUCAACAAAAGACAGAUGACUUUACGGACU---UUCUAGAGCCAAUGGCAGAAGAGUUAGAGCU ......((.(((.....(((((((...((((.((((..(((((((.........((((((.(........).)))))).....)))---))))...)))).))))..))))))).))))) ( -28.94) >DroAna_CAF1 44482 120 + 1 GCUGGACGAUUUUGAUGAUUUUCUAGAGCCCAUGGCCGAGGAAGUUGAGCUAAUGAGUCACCAAAAAGAAAAUAAUAAGAAAGAAAAGAAAGUGGAAUCAAUGCCGAAGCCACUGGACCU ...((....(((((.((((((.....(((.((...(....)....)).)))...)))))).)))))........................(((((..((......))..)))))...)). ( -21.70) >consensus GGCCGAGGACUUGAAAGAAUUUCUAGAGCCGAUGGCGGAGGAAGUGGAGUUGAUGAGCCAACAAAAGGCGAAUGACUUCAAGGACU___UUCUCGAGCCAAUGGCAGAGGAGUUAGAGCU .................(((((((...((((.((((...((((.((((((((....(((.......)))...)))))))).........))))...)))).))))..)))))))...... (-17.82 = -18.38 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:45 2006